Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium700g00002 ATGCACCATGCTAAAATTCTTTCAAGCTTTGTCATGAGTCAATACATCTACCTGCTCTGCGCTAAGATTCTACTATTCAGCTTCTCCTTTTGCTCTTCTTCTGATACCATAGTTGCTGACAAAGGCATCAGAGATGGAGAGCTTCTTGTTTCAAAAGCCCAAACATTTGCTCTTGGATTCTTCAGTCCAGTCAAGTCCAACTTCCGCTATGTGGGAATATGGTACAACAATGTGCAAGAACAAACTGTTGCTTGGGTTGCAAACAGAAACACTCCAATAAATGACACTTCTGGGTTTCTCTCAATCAATCCAGATGGAAACCTAGTACTCCAACACAAATATAGCACCTTTCCAGTTTGGTCTACCAATATTTCTACTTCTCAATCAAACAGCACCAAAGTCATGGCTAAACTCACAGATATAGGTAATCTTGTTCTGATTCTTGACAACACCAAAGCTGTCATCTGGCAAAGCTTTGATCATCCCACAGATACCTTACTTCAATATCTAAGGGTTGGTTTCGACAGAAGAACAAACCAGAGCTGGTTCCTCCAATCTTGGAAGACAGATAATGATCCCGGAGCAGGTTCGTACACATTGAAAATAAGCAGCGCTGGGAAACCCCAGTTGATCTTTTACCACCAGAACCTGCCCTTTTGGCGAGGCGGATCGTGGAACGGAGAATTATTTATGGGTATACCCGACATGAAGAGAGATATGTATACTTTTAACGCTTCTTATATAGAAGATGATAACCAGGCAGTGCTCTCGTATAGCACGGTTGATCAGTCGTTGATCTCTAGGGTAGTAGTTCAACCATCAGGTTTCTTTCAAGTATTCACTTGGGATGACCAAAAGAATCAATGGAATAGGTACTGGTCTGAACCAACAAATCAGTGTGATAACTATGGAACCTGTGGATCAAACGGCAATTGTGACCCTTTGAACTTTGAGGAATTTCGGTGCACTTGTCTACCTGGGTTTGAACCCAAATCCCCACATGAGTGGTACAATAACAGAGATGGGTCAGAAGGGTGCGTGAGGAAGAAAGGTGTATCAGTTTGCGGGAATGGAGAAGGGTTTGTGAAACTTGAAGGCTTAAAGCTCCCTGATACGTCTGAGGCAACTGCCAAAGAGGGTTGGAGTTTGGATGAGTGTGAGAAGGATTGCTTGAGAAACTGCTCTTGCACTGCTTATGCAGTTCTTGATGTGAGGAATGGTGGAAGTGGGTGCTTGGCATGGCATGGAAATTTAATAGACATACAAAAACTGAGTGATCAAGGCCAAGATTTATTTGTTCGAGTTGATGCAGTCGAACTAGAAAATTATAACAAAAAAAGAAAAGGAGTACGCAGTAAAAAGAGGATGGTTGCAATTCCTATTGCTTCAGTACTGACAAGTGTCATTCTTTTCTCCTGTGTATATTACATGTGGAAGAGAAAAAGCAAAGATAAAGTGAGGCAACATTTAAACCAATTTTCCCCTGAAGACGACCACGATATCCCAAGCAACGCACATCCAAATCTTCCCTTTTTCAGCCTTAAAGTAATAATGGAAGCCACAAGAAATTTTGGAGATGAGAACAAGCTTGGGCAAGGTGGATTTGGTTCTGTTTACAAGGGCTGCCTAGCCAATGGACAAGAGATAGCAGTGAAAAGATTGTCTGAACATTCAGGTCAAGGGACAGAAGAGTTTAAAACTGAAGTTAGATTGTTAGTTAAACTTCAACACAGAAATCTGGTGCGGCTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATGTTAGTTTATGAATATTTACCAAATAAAAGCTTGGACTTTTTCATATTCGATGAAAAGCGAAGGTCATCACTGACTTGGGATAAGCGGTTTGAAATCATTTTGGGGATTGCTCGAGGTGTTCTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCAAGCAATGTACTCCTTGATGCTGCAATGAATCCCAAAATCTCAGATTTCGGTATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAGGACGAGAAGAGTGGTTGGAACATACGGTTATATGTCACCAGAATATGCAATGGATGGACGGTATTCAACAAAATCTGATGTCTTTAGTTTCGGGGTCTTACTCCTGGAGATTATTGCTGGCAAGAGAAATACAGATTGTGAAAAGGGAAGATCCTCCCCAAATTTAATTGGACATGTGTGGATACTTTGGACAGAAGGAATGGCCTTGGACATAGTTGATTCAACACTGTCTCAGTCTTACTCTCCAGCTCTTGTTCTGAGGTGCATTCAAATTGGTCTATTGTGCGTTCAAGAAAATGCAGAGAATAGACCTTCCTTGTCGGAAGTTGCTTTTATGCTGAGCAATGAAACACCTCTTTCCCCACCCCAAAAGCCAGCATTTTTATTCCATGGAGACAGAGATTGTCCTGAGCCGTCAACATCAGGGGGAGGATCTTCAATAAATGAAGTAACAGCAACCACCATCATCGCTCGCTAG 2523 0.4142 MHHAKILSSFVMSQYIYLLCAKILLFSFSFCSSSDTIVADKGIRDGELLVSKAQTFALGFFSPVKSNFRYVGIWYNNVQEQTVAWVANRNTPINDTSGFLSINPDGNLVLQHKYSTFPVWSTNISTSQSNSTKVMAKLTDIGNLVLILDNTKAVIWQSFDHPTDTLLQYLRVGFDRRTNQSWFLQSWKTDNDPGAGSYTLKISSAGKPQLIFYHQNLPFWRGGSWNGELFMGIPDMKRDMYTFNASYIEDDNQAVLSYSTVDQSLISRVVVQPSGFFQVFTWDDQKNQWNRYWSEPTNQCDNYGTCGSNGNCDPLNFEEFRCTCLPGFEPKSPHEWYNNRDGSEGCVRKKGVSVCGNGEGFVKLEGLKLPDTSEATAKEGWSLDECEKDCLRNCSCTAYAVLDVRNGGSGCLAWHGNLIDIQKLSDQGQDLFVRVDAVELENYNKKRKGVRSKKRMVAIPIASVLTSVILFSCVYYMWKRKSKDKVRQHLNQFSPEDDHDIPSNAHPNLPFFSLKVIMEATRNFGDENKLGQGGFGSVYKGCLANGQEIAVKRLSEHSGQGTEEFKTEVRLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDEKRRSSLTWDKRFEIILGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDQIQARTRRVVGTYGYMSPEYAMDGRYSTKSDVFSFGVLLLEIIAGKRNTDCEKGRSSPNLIGHVWILWTEGMALDIVDSTLSQSYSPALVLRCIQIGLLCVQENAENRPSLSEVAFMLSNETPLSPPQKPAFLFHGDRDCPEPSTSGGGSSINEVTATTIIAR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium700g00002 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 193 IPR036426 -
Vium700g00002 840 PIRSF SRK 6 840 IPR024171 GO:0004674
Vium700g00002 840 ProSiteProfiles EGF-like domain profile. 296 334 IPR000742 -
Vium700g00002 840 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Vium700g00002 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 488 599 - -
Vium700g00002 840 Gene3D Transferase(Phosphotransferase) domain 1 600 802 - -
Vium700g00002 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 803 - -
Vium700g00002 840 CDD B_lectin 43 162 IPR001480 -
Vium700g00002 840 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 787 - -
Vium700g00002 840 SMART blect_4 40 162 IPR001480 -
Vium700g00002 840 Pfam PAN-like domain 355 421 IPR003609 -
Vium700g00002 840 ProSiteProfiles Protein kinase domain profile. 524 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00002 840 Gene3D Hepatocyte Growth Factor 353 433 - -
Vium700g00002 840 Gene3D Phosphorylase Kinase; domain 1 485 599 - -
Vium700g00002 840 Pfam Protein tyrosine and serine/threonine kinase 528 791 IPR001245 GO:0004672|GO:0006468
Vium700g00002 840 Gene3D - 30 160 IPR036426 -
Vium700g00002 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 159 - -
Vium700g00002 840 SMART serkin_6 524 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00002 840 ProSiteProfiles Bulb-type lectin domain profile. 34 159 IPR001480 -
Vium700g00002 840 CDD EGF_CA 298 332 - -
Vium700g00002 840 CDD PAN_AP_plant 356 435 - -
Vium700g00002 840 SUPERFAMILY Protein kinase-like (PK-like) 506 809 IPR011009 -
Vium700g00002 840 CDD STKc_IRAK 530 795 - -
Vium700g00002 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Vium700g00002 840 SMART ntp_6 356 435 IPR003609 -
Vium700g00002 840 Pfam S-locus glycoprotein domain 220 332 IPR000858 GO:0048544
Vium700g00002 840 ProSiteProfiles PAN/Apple domain profile. 355 436 IPR003609 -
Vium700g00002 840 Pfam D-mannose binding lectin 82 188 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium700g00002 Vium-Chr700 17309 21506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium700g00002 444 810 Receptor kinase-like Gene Family AT4G23190 51.482 1.26e-121 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium700g00002 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium700g00002 - - tpra:123914661 1234.55