Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium700g00001 ATGAAGTTGATTTCAGCTAAAGAGTTTCTCACCCCATTTCTTCTTCTGACGCTTCTTTACCCTTGTTGTCATACACTCCACAACACCATAACCACAGGCCAACCCTTGAAAGACGGCGACGTTTTGCTCTCCGATGGGTTGGGAAACTTTGCACTCGGTTTCTTCAGCCCATCAAACTCCACAACCCGATACGTTGGGATATGGTACAACAAAATTTCGGAACAAACGGTAGTGTGGGTTGCCAACAGAGACGCTCCGCTCAACGACACTTCCGGTGTTCTATCCATGGACAACCACGGAAACCTCGTACTCCACAGCAATAACACCCGAAACCTCGACCCCGTTTGGTCTTCAAACGCTTCCATGGCATCGACGAACGTTTCGGCCAAGCTTTTGGACACTGGAAACCTAGTTTTGATCCAAGCCGACAAAATTGGTTTTCGTTGGCAGAGTTTTGACTATCCTAGTAATACTATGCTTCCGTTCATGAAACTCGGGTTGAACAGAAAAACCGGTCTGGACCGGTTTTTAACTTCTTGGAAATCGGCCAACGACCCTGGAACCGGGAACTTGACGTATAAAATCGACCCAACCGGGTTTCCGCAGCTGTTTCTTTACAGAGGGGATGCCCCGTTGTGGAGGGTCGGGTCATGGACGGGTCAGAGATGGAGCGGGGTGCCCGAGATGACTCCGAATTTTATCTTCAACGTTAGCTACGTGAACGACGAGAAAGAGGTTTCGATAATGTACGGAGTGAAAGACCCGACGGTGTTCTCGAGAATGGTGCTGGAGGAGACTGGGCACGTGACGAGGTTCACGTGGCAGGGTCGCGAGCACAGGTGGTTTTCGATATGGGACGCGCCAAAGGAGGAGTGCGACAACTTCAGGCGGTGCGGGTCGAACGCGAACTGCGACCCGTATCACGAGGATAAGTTCGAGTGCGAGTGTTTGCCGGGGTTCGAACCGAGGTCCGAGAGGGAGTGGTTTCTTCGTGACGGGTCGGGTGGTTGTATTCGGAAGAGTAATGTGTCCACGTGTGGAAGCGGAGAGGGGTTTGTGGAGGTGCCACGTGTGAAGGTCCCGGACACGTCGAAGGCGCGTGTGGTGGCAATGATCGGAATGAGAGAATGCAGAGAGAGATGTTTGAAAGATTGCACGTGTGCGGCTTACACGAGTGCGAACGAGAACTCGGAGAGTGGGTGTCTTACTTGGCACGGTGACATGGAGGACACGAGGACCTACACGCAAGTAGGACAGAGCTTGTACGTGCGAGTGGATGCGCTTGAATTGGCTAAATATGCAAAACATCCGTATGGTTCTCTTGGAAAGAAGGGAATGGTGGTAATTTTGACCATTGCTATTCTTATGATATTGTTTTTGGCAGTGACTTTCGTGTGTTGGTCTGTTAAAGACAGGAAACAAGGGATAAAAAGGAATCGCAAGTATTCCTTTCGTCTTAACTTGGAGGACTCTACCGATCTACAAGAATTTGACTCTACAAAAAATTCAGATTTGCCATTCTTTGATCTTAGCTCCATTGCTGCTGCCACAGACAATTTCTCTGATTCTAACAAGCTTGGTCAAGGGGGCTTTGGTTCTGTTTATAAGGGTCTACTGAGTAATGGAATGGAAATAGCAGTGAAGAGGCTGTCAAAGAACTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGGTGGTTTTGATCTCAAAGCTCCAACACAGAAATCTTGTGAGGATCTTAGGTTGCTGCATTCAAGGACAGGAGAAGATGTTAATCTATGAGTATTTGCCTAACAAGAGTTTGGACTCTCTAATTTATGACGAATCTAAAAGGTCACAACTAGACTGGAAAAAGCGATTTGATATCATCTGTGGGATTGCTAGAGGAATTTTATACCTTCATCAAGATTCACGATTGAGAATCATTCATAGAGACCTAAAAGCCAGCAATGTCTTGCTGGACTCTGCATTGAACCCAAAAATTGCAGATTTTGGTATGGCTAGAATATTTGGTGGAGACCAAATTGAAGCAAACACAAACCGTGTTGTTGGAACCTATGGCTATATGTCACCAGAATATGCCATGGAAGGACAATTTTCAATAAAGTCTGATGTATACAGCTTCGGAGTTTTACTTCTAGAGATCATTACAGGCAGAAAGAACAGTGGTCAATATGAAGACATTACAGCCACAAATTTAGTTGGACATATATGGGAACTATGGAGAGAAGGAAAAACCATGGAGATCGTTGATCAATCATTAGGAGAGTCGCTCTGTGACCTTGAAGTCCAAAGATGCATACAAATTGGTCTTTTGTGCGTGCAAGATTATGCCGCCGACAGACCATCTATGTCAGCAGTTGTTTTCATGCTGGGTAATGACTCCACTCTTCCTGACCCAAAACAACCAGCATTTATTTTCAAGAAAACTAATTATGAGAGCTCAAATCCATCAACCAGTGAAGGAATTTATTCAGTAAATGATGCGAGTATAACTATGATTGAAGCTCGCTGA 2514 0.4586 MKLISAKEFLTPFLLLTLLYPCCHTLHNTITTGQPLKDGDVLLSDGLGNFALGFFSPSNSTTRYVGIWYNKISEQTVVWVANRDAPLNDTSGVLSMDNHGNLVLHSNNTRNLDPVWSSNASMASTNVSAKLLDTGNLVLIQADKIGFRWQSFDYPSNTMLPFMKLGLNRKTGLDRFLTSWKSANDPGTGNLTYKIDPTGFPQLFLYRGDAPLWRVGSWTGQRWSGVPEMTPNFIFNVSYVNDEKEVSIMYGVKDPTVFSRMVLEETGHVTRFTWQGREHRWFSIWDAPKEECDNFRRCGSNANCDPYHEDKFECECLPGFEPRSEREWFLRDGSGGCIRKSNVSTCGSGEGFVEVPRVKVPDTSKARVVAMIGMRECRERCLKDCTCAAYTSANENSESGCLTWHGDMEDTRTYTQVGQSLYVRVDALELAKYAKHPYGSLGKKGMVVILTIAILMILFLAVTFVCWSVKDRKQGIKRNRKYSFRLNLEDSTDLQEFDSTKNSDLPFFDLSSIAAATDNFSDSNKLGQGGFGSVYKGLLSNGMEIAVKRLSKNSGQGIEEFKNEVVLISKLQHRNLVRILGCCIQGQEKMLIYEYLPNKSLDSLIYDESKRSQLDWKKRFDIICGIARGILYLHQDSRLRIIHRDLKASNVLLDSALNPKIADFGMARIFGGDQIEANTNRVVGTYGYMSPEYAMEGQFSIKSDVYSFGVLLLEIITGRKNSGQYEDITATNLVGHIWELWREGKTMEIVDQSLGESLCDLEVQRCIQIGLLCVQDYAADRPSMSAVVFMLGNDSTLPDPKQPAFIFKKTNYESSNPSTSEGIYSVNDASITMIEAR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium700g00001 837 Gene3D Transferase(Phosphotransferase) domain 1 596 801 - -
Vium700g00001 837 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 783 - -
Vium700g00001 837 Pfam Protein tyrosine and serine/threonine kinase 523 788 IPR001245 GO:0004672|GO:0006468
Vium700g00001 837 ProSiteProfiles Protein kinase domain profile. 520 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00001 837 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Vium700g00001 837 Pfam Domain of unknown function (DUF3403) 793 837 IPR021820 GO:0004674
Vium700g00001 837 SMART serkin_6 520 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00001 837 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Vium700g00001 837 CDD PAN_AP_plant 344 425 - -
Vium700g00001 837 CDD B_lectin 34 155 IPR001480 -
Vium700g00001 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 186 IPR036426 -
Vium700g00001 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 152 - -
Vium700g00001 837 ProSiteProfiles PAN/Apple domain profile. 346 426 IPR003609 -
Vium700g00001 837 CDD STKc_IRAK 526 791 - -
Vium700g00001 837 Gene3D - 22 152 IPR036426 -
Vium700g00001 837 PIRSF SRK 1 837 IPR024171 GO:0004674
Vium700g00001 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Vium700g00001 837 Pfam D-mannose binding lectin 76 181 IPR001480 -
Vium700g00001 837 CDD EGF_CA 291 324 - -
Vium700g00001 837 Gene3D Phosphorylase Kinase; domain 1 481 595 - -
Vium700g00001 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 485 595 - -
Vium700g00001 837 SMART ntp_6 347 425 IPR003609 -
Vium700g00001 837 Pfam PAN-like domain 346 410 IPR003609 -
Vium700g00001 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 799 - -
Vium700g00001 837 SMART blect_4 33 155 IPR001480 -
Vium700g00001 837 ProSiteProfiles Bulb-type lectin domain profile. 27 152 IPR001480 -
Vium700g00001 837 ProSiteProfiles EGF-like domain profile. 288 325 IPR000742 -
Vium700g00001 837 SUPERFAMILY Protein kinase-like (PK-like) 504 815 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium700g00001 Vium-Chr700 11062 17293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium700g00001 480 837 Receptor kinase-like Gene Family AT4G11530 58.082 1.53e-137 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium700g00001 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium700g00001 - - gmx:100812814 1484.16