Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7007g00001 ATGTCACCCGTGCAGTTCGTTTCTTCCTCCTCTCATGCTCCTTCTTGGCTTCAACTCCTCCTCACCGAGAAGTTCTACAACGCTTGCATAATTCACGAGGAGGCAAAGAAGAACGAGAAGAACGTCTATTGCTTGGATTGTTGCATCAGTCTCTGCCCTCACTGTTTGTCCCCTCACCGCTCTCATAGACTCTTGCAGATTAGAAGATATGTGTATCATGATGTTATAAGGTTGGATGACGCTGCAAAATTAATTGACTGCACTTCAGTTCAATCCTACACGACCAACAGTGCAAAAGTGGTATTTTTAAACCAAAGGCCACAGGCAAGGAACTTCAGAGGCTCCGGCAATTTCTGCAGCACCTGTGACAGAAGTCTGCAAGACCCATACCATTTCTGCTCCCTTTCTTGCAAGATCAATTATCTGGTCAGAACTAAGGGTTCTCTCTCTGGTTACCTCTTCGAGTGCAACTACTTGCCGCTACCGGAATGTGGGCTCGACGATGGTCTGATGACCCCTGACTCGGTTCTGGAACCGGCCGGTTCGGCTAGAACCTCGTCAGGCTCCGGAGGGTATGGTGGGGTGGATTGCAGGACCACCCTGGCTTGCACTGCAACCACTGAGATTGTGAGGAAGAAGAGAACCGGAGGCTCTGGTTTCCGGCCACCGTGCCGACCGGCGTGTTCGCCTGTGTCGGAAATCTCGGCGGGTCTGATGAACCGGAGGAAAGGGAACCCCCAGAGGTCCCCGCTGTACTGA 759 0.5178 MSPVQFVSSSSHAPSWLQLLLTEKFYNACIIHEEAKKNEKNVYCLDCCISLCPHCLSPHRSHRLLQIRRYVYHDVIRLDDAAKLIDCTSVQSYTTNSAKVVFLNQRPQARNFRGSGNFCSTCDRSLQDPYHFCSLSCKINYLVRTKGSLSGYLFECNYLPLPECGLDDGLMTPDSVLEPAGSARTSSGSGGYGGVDCRTTLACTATTEIVRKKRTGGSGFRPPCRPACSPVSEISAGLMNRRKGNPQRSPLY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7007g00001 252 ProSiteProfiles Zinc finger B-box type profile. 24 67 IPR000315 GO:0008270
Vium7007g00001 252 Pfam PLATZ transcription factor 68 139 IPR006734 -
Vium7007g00001 252 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 11 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7007g00001 Vium-Chr7007 5389 7657 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vium7007g00001 PLATZ 2.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7007g00001 - - pvu:PHAVU_008G142900g 495.738