Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7000g00004 ATGCAAGAAGAAAATATTTTAGAGGAGAGCAGCAGAAATAAACCTACTCCGCATATGCTCATAGCAGAAGAAGCTGAAGGTGATGACACCAAGTCGATAGAAATGAGTGTAAGAGTTCAGGGAGCGAAGGAGGACATAACAGTGACATGGGAGAATTTGTGGGTCACTGTTTCAAGTGGAAAGAAAAAGAAGCCAATTCTGCAGGATCTTACAGGTTATGCTAGCCCAGGGAGGATTCTGGCCATAATGGGTCCTTCAGGATGTGGAAAATCTACCCTTCTTGATAGTTTAGCAGGAAGATTGAGCTCACCAATGAAGCATTCAGGGAAGATTCTAATAAATGGCCAGAAACAAACACTGGCCTATGGGACATCAGGCTATGTAACACAAGAAGATGCTATGCTGTCAACTTTAACAGCTGGGGAAACTTTATACTACTCTGCTCAGCTTCAGTTTCCAGATTCCATGTCCACAGCAGAGAAGAAGGAACAGGCAGATATCACACTCAGAGAAATGGGTCTGCAAGGTGCCATTAACACAAGGGTTGGAGGGTGGGGTTCTAAAGGTCTGAGTGGGGGACAAAAGAGGAGACTTAGCATCTGCATTGAGATTCTAACACGGCCAAGACTCCTTTTCCTTGACGAACCGACAAGTGGACTTGATAGTGCAGCTTCCTATTATGTTATGAGTAGAATTGCAACTCTAAATCTAAGAGATGGAATTCGAAGGACTATTGTTACTTCCATCCATCAGCCAAGCAGTGAAGTCTTCGAACTTTTTCATGATCTCTGTCTTCTGTCTTCAGGCGAAACTGTATATTTTGGTCCAGCCTCTGGTGCAAATCAGTTTTTTTCTTCAAACGGTTTCCCATGCCCAACTCTCCACAATCCTTCTGATCACTACTTAAGGATCATAAATAAAGATTTCGAACAGGATGTTGAAGAAGGCTTTGGTAAGGGAGTTGGTACAGAAAAAGCAATCGATACCCTTGTAAAGTCTTTCAGGATGTCTCAAGTAAGAAAACAAGTTAAAAGCGAGGTGAAAAAAATAGTTGAAAGTGATTCTTGTGAAACAAGGAAGAACAGGATTCATGCTGCATTTCTTACTCAATGCCTTGTTCTTACAAGAAGATCTTCATTGCAATTCTTTCGTGACATAAGCAATTACTGGCTACGTCTAATTGTCTTTATTGTAATAGCTATAAGCATTGGATCTATCTTCTATAACATAGGCACAGACAATGGATCTATACAGGGGAGAGGTTCTCTGCTCATATTTTTTGTTTCAGTTCTGACTTTCATGACCCTTGTCGGTGGATTTTCTCCACTGTTGGAGGAAATGAAGGTATTTGGACGAGAGAGATTGAATGGACACTATGGTGTGACAGCATTTCTGATAGGCCACACATTCTCTGCTGTTCCTTACATGGTACTGATCTCTGTTATTCCTGGAGGAATAGTGTACCACCTTTGTGGATTGCACAAGGGAATAGATTGTTTCTTCTACTTCACTTGTTTGCTATTTTCCATAGTGATGTGGGTTGAGAGTCTCATGTTGGTGATCGGTAGCATCTGCCCGAACTATGTAATAGGCATGTTCCTTGCTGGTGGAGTTGAAGGACTCATGATTCTAACAGGTGGATTCTACAGACTGCCAAATGATCTTCCGAAGCCATTGTGGAAGTACCCTTTCTACTATGTTTCATTCCTCAAATATGCGCTCCAAGGATCCTTCAAGAATGACTTTGATGGCCTAACATTTTCAGTGAACCTAGAAGGAGGAGGAACTGCAAACATTAGTGGTAGAGAAGTTCTATCAGAAACATGGCACGTGGAAATGGGTCACTCTAAGTGGGTTGATCTTGCAATCATGTTTGGAATGATTGTTCTGTATCGAGTTCTGTTCTTGCTCATCACTAAGTTCAAGGAGAAGTTCAAGCCTTTTCTTGCCTCCATTACTCTTCGACCATGA 1971 0.4176 MQEENILEESSRNKPTPHMLIAEEAEGDDTKSIEMSVRVQGAKEDITVTWENLWVTVSSGKKKKPILQDLTGYASPGRILAIMGPSGCGKSTLLDSLAGRLSSPMKHSGKILINGQKQTLAYGTSGYVTQEDAMLSTLTAGETLYYSAQLQFPDSMSTAEKKEQADITLREMGLQGAINTRVGGWGSKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIATLNLRDGIRRTIVTSIHQPSSEVFELFHDLCLLSSGETVYFGPASGANQFFSSNGFPCPTLHNPSDHYLRIINKDFEQDVEEGFGKGVGTEKAIDTLVKSFRMSQVRKQVKSEVKKIVESDSCETRKNRIHAAFLTQCLVLTRRSSLQFFRDISNYWLRLIVFIVIAISIGSIFYNIGTDNGSIQGRGSLLIFFVSVLTFMTLVGGFSPLLEEMKVFGRERLNGHYGVTAFLIGHTFSAVPYMVLISVIPGGIVYHLCGLHKGIDCFFYFTCLLFSIVMWVESLMLVIGSICPNYVIGMFLAGGVEGLMILTGGFYRLPNDLPKPLWKYPFYYVSFLKYALQGSFKNDFDGLTFSVNLEGGGTANISGREVLSETWHVEMGHSKWVDLAIMFGMIVLYRVLFLLITKFKEKFKPFLASITLRP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7000g00004 656 SMART AAA_5 76 269 IPR003593 GO:0016887
Vium7000g00004 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 48 293 IPR003439 GO:0005524
Vium7000g00004 656 Pfam ABC transporter 67 218 IPR003439 GO:0005524
Vium7000g00004 656 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524|GO:0016887
Vium7000g00004 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 40 652 - -
Vium7000g00004 656 MobiDBLite consensus disorder prediction 1 27 - -
Vium7000g00004 656 FunFam ABC transporter G family member 11 46 333 - -
Vium7000g00004 656 Pfam ABC-2 type transporter 250 307 IPR043926 GO:0140359
Vium7000g00004 656 Pfam ABC-2 type transporter 369 580 IPR013525 GO:0016020|GO:0140359
Vium7000g00004 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 283 IPR027417 -
Vium7000g00004 656 CDD ABCG_EPDR 46 275 - -
Vium7000g00004 656 Gene3D - 46 370 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7000g00004 Vium-Chr7000 86345 92621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7000g00004 66 228 Calmodulin-binding Proteins AT2G36910 35.088 4.06e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7000g00004 K05681 - gmx:100790102 1074.69