Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7000g00003 ATGGAGGAAGAGAACGACATAACAGTGACATGGGAGGATTTGCAGGCTAGAGTTGCCGGTGGAAAGAATAGAAAATTAATACTGAATGGTCTAACTGGTTATGCACAACCAGGGAAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAATCGACACTTCTTGATGCTTTAGCAGGAAGATTGGGATCGAACATAAAGCAAACGGGGAAGATTCTAATCAATGGCCTGAAGCAAGAACTGGCCTACGGAACATCAGGGTATGTGACACAAGACGATGCGATGCTGTCATGTTTAACAGCTGGGGAAACGTTGTACTACTCAGCTGAGCTCCAATTTCCAAACAGCATGTCTGTAGCTGAGAAGAAGGAACGAGCAGATGCTACACTGAGAGAAATGGGTCTGCAAGATGCGATCAACACAAGGGTTGGAGGATGGAGTTGTAAAGGTCTGAGTGGGGGACAGAAACGGAGACTCAGCATATGCATTGAGATTCTAACACATCCCAGACTCCTCTTCCTTGATGAACCAACCAGTGGCCTTGATAGTGCAGCTTCCTTTTATGTTATGACTGGAATTGCAAGTCTCATTCTAAAGGATGGAATTCAAAGGACTATTGTGGCTTCCATCCACCAGCCTAGCAGTCAGGTTTTCCAACTTTTTCATCATCTTTGTCTTCTCTCTTCAGGAGAGACCGTGTATTTTGGACCAGCCTCTCATGCAAATCAGTTTTTCTCTTCCAATGGTTTTCCCTGCCCACCTCTCTACAATCCTTCCGATCATTACCTAAGGATCATAAACAAAGATTTCAATCAGGATGCCGACGAAGGAATTACCACTGAAGAAGCAACTAATATCCTTGTCAGTTCTTATAAATCGTCTGAATATAGAAATCACGTTCAGAATGAAATAGCAAAAATAAGTGTAAACGATTCTGGTGCAGTTGGAAGGAAGAAGATTCACGCTGAATTCCTCACTCAGTGTCTGGTTCTTCTGAAAAGATCTTCGAAGCAAATCTATCGTGATATAAGCAATTACTGGTTACGTCTGACTGTCTTTATAGCAGTATCTCTAAGCTTGGGCTCTATCTTCTACCACGTTGGTGCAAGTATGAGATCAATTCAGGAAAGAGGATCGCTGCTTTGTTTTTACGTTTCGGTTTTGTGTTTCATGACACTTGTCGGTGGATTCTCGCCGTTAATCGAGGAAATGAAGGTGTTAAAGAGAGAAAGATTGAATGGACATTATGGTATAACAGCGTTTCTGGTAGGGAGCACATTTTCTGCTGTTCCTTACACAGTATTGGTATCTTTCATTCCGGGAGCTATTGTTAATTATATTTCTGGACTTCACAAAGGATTAGAGAACTTTGTATACTTTTCTTCTGTCCTATTTGCTATTGTGATGTGGGTTGAGAGCCTCATGATGGTTGTTGGGAGCATTTTTCCAAATTTTGTTATGGGTGTGATCACTGCTGGTGGGGTTGAAGGACTGATGATTTTGACAAGTGGATTCTACAGGCTGCCTAATGATCTTCCGAAAGCATTATGGAAATACCCTTTGTACCATGTTTCCTTCCTCAACTATGGTTTCCAAGGATTGTTAAAGAATGAATTTGAGGGATTAATGTTTAGTTCAGATAAGGAAGGAGGAGGCATAAGTCTCAGTGGTAGTTATATTCTGTCAGAGACATGGCATGTGCAAATGGGTCACTCAAAGTGGGTTGATCTTGCTATCATGTTTGGTATGATTCTTCTCTATAGAGTTCTATTCTTGGTCATCACTAAATGCAAGGAGAAATTGAAACATGTTCATGTTGGCACTAAGGCTCCTCAGGCAAAAGTTTTCTCCCGAACCAACATCAATGATATTTAG 1875 0.416 MEEENDITVTWEDLQARVAGGKNRKLILNGLTGYAQPGKLLAIMGPSGCGKSTLLDALAGRLGSNIKQTGKILINGLKQELAYGTSGYVTQDDAMLSCLTAGETLYYSAELQFPNSMSVAEKKERADATLREMGLQDAINTRVGGWSCKGLSGGQKRRLSICIEILTHPRLLFLDEPTSGLDSAASFYVMTGIASLILKDGIQRTIVASIHQPSSQVFQLFHHLCLLSSGETVYFGPASHANQFFSSNGFPCPPLYNPSDHYLRIINKDFNQDADEGITTEEATNILVSSYKSSEYRNHVQNEIAKISVNDSGAVGRKKIHAEFLTQCLVLLKRSSKQIYRDISNYWLRLTVFIAVSLSLGSIFYHVGASMRSIQERGSLLCFYVSVLCFMTLVGGFSPLIEEMKVLKRERLNGHYGITAFLVGSTFSAVPYTVLVSFIPGAIVNYISGLHKGLENFVYFSSVLFAIVMWVESLMMVVGSIFPNFVMGVITAGGVEGLMILTSGFYRLPNDLPKALWKYPLYHVSFLNYGFQGLLKNEFEGLMFSSDKEGGGISLSGSYILSETWHVQMGHSKWVDLAIMFGMILLYRVLFLVITKCKEKLKHVHVGTKAPQAKVFSRTNINDI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7000g00003 624 SMART AAA_5 37 226 IPR003593 GO:0016887
Vium7000g00003 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 245 IPR027417 -
Vium7000g00003 624 ProSitePatterns ABC transporters family signature. 151 165 IPR017871 GO:0005524|GO:0016887
Vium7000g00003 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 9 254 IPR003439 GO:0005524
Vium7000g00003 624 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 4 607 - -
Vium7000g00003 624 Pfam ABC transporter 29 179 IPR003439 GO:0005524
Vium7000g00003 624 Pfam ABC-2 type transporter 211 309 IPR043926 GO:0140359
Vium7000g00003 624 Pfam ABC-2 type transporter 326 539 IPR013525 GO:0016020|GO:0140359
Vium7000g00003 624 FunFam ABC transporter G family member 11 7 290 - -
Vium7000g00003 624 Gene3D - 1 248 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7000g00003 Vium-Chr7000 73114 76216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7000g00003 27 240 Calmodulin-binding Proteins AT2G36910 25.339 4.96e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7000g00003 K05681 - gmx:100820615 983.4