Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7000g00001 ATGGATAGTTCAGAAGCAGTGTTGGAGAAAAGTGTGATGAACATCGAAGGCAGCAGAGTGGAAATGGAAGGTATCTGCTTGACATGGAAGGATGTATGGGTCACTGCTTCTAACAGAAAGAATGGAAGCATATCAATTCTCGAGGGTCTCACTGGTTATGCTAAACCAGGTCAACTCTTGGCAATTATGGGTCCTTCTGGCTGTGGCAAATCTACACTGCTTGATACTTTAGCAGGTAGATTAAGTTCAAAGATGAGGCAAAGTGGGGAGATTCTGATCAATGGTCATAAACAAAGATTGACTTATGGAACCTCAGCGTATGTGACACAAGATGATACCTTTTTGACAACCTTAACGGTTGGAGAAGCTGTGCATTATTCAGCTCAACTGCAGTTACCTGACACCATGTCAAAACAAGAGAAGAAAGAGAGAGCAGACTTTACAATCAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGATGGGGTGTTAAAGGGATCAGTGGTGGTCAGAAAAGGAGAGTTAGCATCTGCATTGAGATTCTTACACGTCCTAATCTTCTCTTTCTTGATGAACCAACAAGTGGACTTGACAGTGCAGCTTCCTACTATGTCATCAAAAGAATCGCTTCCCTTGCTCAAAATGATCACATTAAGAGGACTGTTATAGCATCAATCCATCAACCTAGTACTGAAGTTTTTCATCTTTTCGACAACCTTTGTCTTCTATCTTCAGGTAGAACTGTCTACTTTGGACCTGCTTCTGCTGCATCTGAGTTTTTCGCTTCATATGGCTATCCTTGTCCCACTCTCATGAATCCGTCTGATCATTTACTGAAAACTATAAACAAGGATTTCGATCAGGACATTGAGGTGGGTTTAGCAGTAACTACAAACTTGCCTACAGAAGAAGTAATTCACATCCTTGTAAACTCATACAAATGCTCTGAGAGGAATCAAGAAGTTCAAAGTGAAGTAGCTTTACTATCTGAGAAGAAGAAAAGTTCATTGGATGTGAAGAGAGTACATGCTGGCTTCCTTAACCAGTGCTTTGCTCTTACCAAAAGATCATTCGTCAACATGTTTCGTGATCTGGGCTATTATTGGTTGCGCCTTGTCATATATATTGCATTGGGTATAAGTTTAGCCACTGTTTTCCATAATTTGGGCACAAGTTATGACTCCATTAAGGATCGAGGTTCTCTTGTTGCTTTCATAGTTGGATTCCTCACTTTCATGACCATTGGTGGATTCCCTTCCTTTGTGGAAGTCATGAAGGTATTTCAACGAGAAAGAGAAAACGGGCATTATGGTGTCACTGCATTTGTGATTGCAAACACCTTATCATCTATACCATTCTTGGTATTGGTTGCAGTAATTCCTTGGGTTATAGCTTACTACCTTCCTGGTCTTCAGAATGGATTCGAACATTTCGTGTATTTCATTTGTGTTTTATTTTCTAGTCTGATGTTAGTGGAGAGTCTTATGATGATAGTTGCGAGCATTGTTCCCAACTATCTAATGGGCATCATAACTGGTGCTGGAATTCAAGGAGTAATGCTTTTACTGAGTGGCTTCTTTAAGTTGCCAAACGATATTCCCAAGCCAGTTTGGAAATACCCTTTACACTACGTTGCTTTTCATACCTTTGCCAACCAAGGAATGTTCAAGAACGAGTATGAAGGACTAAGATTTGAAGCAGAAAATGATGGAGGAAGCTCACACAGTTACATCACTGGTGAAGAGGTTTTGAGAAATGTGTGGCAAGTTGACATGAGTTACTCAAAGTGGGTCAATCTTGCAATCTTGCTGGGGATGATTGTTCTGTATCGAGTATTATTTTTGGTTATTATCAAGATTGAAGAGAAGTTGAAGACCGTTGTTGTCCCGCTGTCTTCCAAGAGATCAACACAAATTATGGAAAACCCCAACGCCACTCTTTCGCATTCACAAAATACTTAG 1971 0.4033 MDSSEAVLEKSVMNIEGSRVEMEGICLTWKDVWVTASNRKNGSISILEGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLSSKMRQSGEILINGHKQRLTYGTSAYVTQDDTFLTTLTVGEAVHYSAQLQLPDTMSKQEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPNLLFLDEPTSGLDSAASYYVIKRIASLAQNDHIKRTVIASIHQPSTEVFHLFDNLCLLSSGRTVYFGPASAASEFFASYGYPCPTLMNPSDHLLKTINKDFDQDIEVGLAVTTNLPTEEVIHILVNSYKCSERNQEVQSEVALLSEKKKSSLDVKRVHAGFLNQCFALTKRSFVNMFRDLGYYWLRLVIYIALGISLATVFHNLGTSYDSIKDRGSLVAFIVGFLTFMTIGGFPSFVEVMKVFQRERENGHYGVTAFVIANTLSSIPFLVLVAVIPWVIAYYLPGLQNGFEHFVYFICVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGVMLLLSGFFKLPNDIPKPVWKYPLHYVAFHTFANQGMFKNEYEGLRFEAENDGGSSHSYITGEEVLRNVWQVDMSYSKWVNLAILLGMIVLYRVLFLVIIKIEEKLKTVVVPLSSKRSTQIMENPNATLSHSQNT 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7000g00001 656 Pfam ABC transporter 49 198 IPR003439 GO:0005524
Vium7000g00001 656 Gene3D - 27 284 IPR027417 -
Vium7000g00001 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 273 IPR003439 GO:0005524
Vium7000g00001 656 SMART AAA_5 56 250 IPR003593 GO:0016887
Vium7000g00001 656 FunFam ABC transporter G family member 11 25 315 - -
Vium7000g00001 656 Pfam ABC-2 type transporter 352 563 IPR013525 GO:0016020|GO:0140359
Vium7000g00001 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 271 IPR027417 -
Vium7000g00001 656 Pfam ABC-2 type transporter 230 335 IPR043926 GO:0140359
Vium7000g00001 656 ProSitePatterns ABC transporters family signature. 170 184 IPR017871 GO:0005524|GO:0016887
Vium7000g00001 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 18 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7000g00001 Vium-Chr7000 25300 28573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7000g00001 44 234 Calmodulin-binding Proteins AT2G36910 29.442 1.23e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7000g00001 K05681 - gmx:100794527 1064.68