Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium699g00001 ATGGAATTGGAGGCTGATCATCAAAATGGGATCCGAAGCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTTGATGACGTCACAGAACAACCTTGTTCCACCACTACCAGGGACAGCGTCGTAACTGCAACTACAATTACTACTGCGTCTGTAACTAATAACAACCTCCACTTGGCGGAGCAGTCCAAGAAGCCTCCGCCAAAGAGGACTTCCACCAAGGACCGCCACACCAAGGTCGATGGCCGAGGCCGCCGGATCCGCATGCCGGCGGCCTGTGCTGCCAGAGTCTTTCAGCTAACGCGTGAGCTGGGACACAAGTCTGACGGAGAGACCATAGAATGGCTCCTTCAGCAGGCCGAGCCATCGGTCATCGCTGCCACCGGCACCGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCGGGCTCCACCATGTCGGCGCCGTCGCACTACTTTCGCGGAAACTACTTCAACCCTAGCACGTTCTCAACCTCCACAGCTGCGGCTGCGGCTGCGGCGGCGGCGCAGCTAAGGAACCGCGCAGAGTGGGACCGGAGCATGAGCATGGTGATGGAGGATTCTCGTAGGAGCATGTTGGAGAACACTTCTTCCATCTCCGCAATTTTGAATTTTAACCCTATGGGTAACATCAATGTAATTCAGCAAGCGAAACAAGAGCTTCGAGAAGAATCCGGTGGCGGTCTTGAATCGGTTGCTTCGGATTCTGACGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAACTGTCACAAATGGGAAGCTATTTGATACAATCGAGCACAGGGTCGCTTCCATCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGTAACCAATCCATGAGCGGTGGTGGAGGTGGCGGCAGCGGCAATGGTAACGATAATCCCATTTGGGCAATTCCCTCCGTTGGGAACAGTGGGGTATATAGAGGAGGTATGTCTCCCCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGCCCCTTATGCCCGGTGGTCAGCTGGGTTCTGGTATGATTGGTGGCGGAGGTGGCGGTGGTGGTAGCGGTGGTGGTAGCGGCTGTGCTCAACTTCTAAGCGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGACAGATGCCGGCGAACGGCGTCTCGGAGTCTCCAGGAAGCGGCGGACAACCTCACGGCGGAGATGATGGACGTGACTCAACCAGTCAACATTCCTGA 1281 0.5535 MELEADHQNGIRSRPNFPLQLLEKKDVDDVTEQPCSTTTRDSVVTATTITTASVTNNNLHLAEQSKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSTAAAAAAAAAQLRNRAEWDRSMSMVMEDSRRSMLENTSSISAILNFNPMGNINVIQQAKQELREESGGGLESVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPSSHASNTAAFWMVAGHGNQSMSGGGGGGSGNGNDNPIWAIPSVGNSGVYRGGMSPPGGIHFMNFASPMPLMPGGQLGSGMIGGGGGGGGSGGGSGCAQLLSESNLGMLAALNAYRQMPANGVSESPGSGGQPHGGDDGRDSTSQHS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium699g00001 426 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Vium699g00001 426 Pfam TCP family transcription factor 73 198 IPR017887 -
Vium699g00001 426 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 39 388 IPR005333 GO:0003700
Vium699g00001 426 MobiDBLite consensus disorder prediction 398 426 - -
Vium699g00001 426 MobiDBLite consensus disorder prediction 65 83 - -
Vium699g00001 426 MobiDBLite consensus disorder prediction 236 265 - -
Vium699g00001 426 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium699g00001 Vium-Chr699 22601 24436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium699g00001 15 355 TCP Transcription Factor Family AT3G47620 38.250 5.62e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium699g00001 TCP 1.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium699g00001 - - vum:124821453 711.064