LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6999g00018	ATGAGGAGAAATGTGCTTCCCTCTCTATTGTTCTTCCTCTGTCTACTTCAGCCCTCTGAAGGTGAACACATTGGCATTTACTGGGGTCAAAAGGCCAATGAGGGAAACCTGACAGAAACGTGTGCAACAGGAAAATACTCCTACGTCAACATAGCCTTTCTTTCCACCTTTGGGAATGGCCAAACCCCAAAACTGAACCTGGCTGGTCATTGTGACGCATCTACTAATGGGTGCACTGAGATGGGAAGAGAAATTAGAAATTGTCAAAAGCAAGGGATCAAGGTGATGCTTTCTATTGGAGGAGGAACTGATGATTACTCTATAACTTCCCTTGAGGATGCCAAGAATGTTTCCGACTACTTGTGGGACAATTTCCTGGGTGGTTCATCCTCATCACGCCCATTTGGGGATGTTGTCTTAGATGGCATTGACTTTGACATACAGGCAGGTGAATCATCATTCCTGGGAAACCTTTCTCTTCAACTCATTTCATATTCACAGACACGTAAAGTGTACCTGTCAGCAGCTCCTCAGTGTCCATTTCCTGATGCTAGGCTGGATTCAGTCCTTGCTACTGGCGTTTTTGACTATGTCTGGATACAATTCTACAACAATCCTCCATGCCAATATACCGACAACAATTTCGACAACCTCCTTAAAGCATGGAACCTTTGGTCCACCTCATTGAAGGCAGGGAAAATGTTTCTGGGGTTACCAGCAGATCAAACTGCAGCTGGAAGCGGTTATGTTCCGGCTGATGTATTAGTTTCTAAGATCTTGCCTGAGATTAAAAAGTCATCAAATTATGGAGGTGTTATGTTGTGGTCAAGGTACGAGGATGAAACGAGTGGATACAGCTCCTACATTCAAAATTTTCACATAAATCAGACGGTAGATTCTCTATGCACACAGCAAAGCCTTCGTGCATGCAGGAGCTCTGAAGGTGGTTTTGTGGAAAGTTTTGGTAACATGTCCAACGTTGGCATACAAATTTATGCCGGCAGCAATGGTACGCAGTGCTGTGAGATCATATGTAGGAACAATTGTTCGTGTCAAGCATATGCCCCAATAAACCGCAAAAACAATACCGGATGCCAGATATGGCTCAAAGGAACAGAATTCGTTAGAGCTTCTGCAGACAAATCACTGCCTATCTATGTTTCTGTTGCACTGCTCCCAGAAGACAAAGTAAACCGGTGGTACATATGGCTCATCGTTGGGGTGGCAGCAGCATTTGCAATACCTGTAATTTTCTCTTCATGGCGTGCCTTGTGGAGAAACTACAAAGCTAAAGTGGAGAGAAAGAAGATGCAGGAGAAGTTATTACTTGATATTGGAGGTAATTCTAGAAAAAGTAAGAACAAGGGAAAGACAAGCAATGGGGTTGAAATATTCACCTTTGAAACCATTGTTGCTGCAACAGAGAATTTCTCAGCGGCCAATAAGCTAGGAGAGGGTGGATTTGGTCCTGTTTATAAGGGAACACTGCGTGATCAGCAAGAAGTAGCAATCAAGCGACTTTCTAAAAGTTCAGGACAAGGGGTGATAGAATTTAAGAATGAAGCCAAACTTATGGCCAAACTCCAACACACTCATCTTGTAAAGCTTCTAGGGTTCTGCATCCAGAGAGATGAAAGAATATTGGTTTATGAATACATGCCTAACAAGAGCTTAGATTTCTACCTATTTGATTCAACTAGAAAGAATTTGCTAGACTGGGAAAAACGGTTGAACATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTGCACAAGTACTCGAGACTAAAGGTGATACATCGAGATCTGAAAGCAGGTAATATATTACTTGATCACGAGATGAATCCTAAGATATCTGACTTTGGCATGGCTCGAATATTCGGTGTAAGAGCATCAGAAGAAAACACAAACAGAGTTGTTGGTACATATGGATACATGGCTCCAGAGTATGCAATAAATGGTGTTGTGTCCATCAAAATAGATGTATTCAGCTTTGGTGTGCTGCTGCTAGAAACACTCAGTGGCAAGAAAAATAACAGTCGTTATGATTCGGATCGTCCACTCAACCTCATAGGATACGCGTGGGAGCTCTGGAATGAAGGCAGAGCTCTGGGGTTGATAGACCCAGATTCGTATGAACTATGTCCTCAGAATGCAGTTTTGAGATGTATTCATATCGGCCTGCTGTGTGTACAAGATCAAGCAACAGATAGACCAACCATGGAAGACATTGTTTCATTTCTATCAAATGATACAATGCAACTTCCCCAACCAAAGCAGCCAGCGTTCTTCATCAATGTGGTTGTGGAAGACTCTGTGCTTCCTTACAGCAGACAAGAACTTCATTCCTCAAATGACTTAACACTTTCTAGCACACATGGAAGATAA	2388	0.4259	MRRNVLPSLLFFLCLLQPSEGEHIGIYWGQKANEGNLTETCATGKYSYVNIAFLSTFGNGQTPKLNLAGHCDASTNGCTEMGREIRNCQKQGIKVMLSIGGGTDDYSITSLEDAKNVSDYLWDNFLGGSSSSRPFGDVVLDGIDFDIQAGESSFLGNLSLQLISYSQTRKVYLSAAPQCPFPDARLDSVLATGVFDYVWIQFYNNPPCQYTDNNFDNLLKAWNLWSTSLKAGKMFLGLPADQTAAGSGYVPADVLVSKILPEIKKSSNYGGVMLWSRYEDETSGYSSYIQNFHINQTVDSLCTQQSLRACRSSEGGFVESFGNMSNVGIQIYAGSNGTQCCEIICRNNCSCQAYAPINRKNNTGCQIWLKGTEFVRASADKSLPIYVSVALLPEDKVNRWYIWLIVGVAAAFAIPVIFSSWRALWRNYKAKVERKKMQEKLLLDIGGNSRKSKNKGKTSNGVEIFTFETIVAATENFSAANKLGEGGFGPVYKGTLRDQQEVAIKRLSKSSGQGVIEFKNEAKLMAKLQHTHLVKLLGFCIQRDERILVYEYMPNKSLDFYLFDSTRKNLLDWEKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKAGNILLDHEMNPKISDFGMARIFGVRASEENTNRVVGTYGYMAPEYAINGVVSIKIDVFSFGVLLLETLSGKKNNSRYDSDRPLNLIGYAWELWNEGRALGLIDPDSYELCPQNAVLRCIHIGLLCVQDQATDRPTMEDIVSFLSNDTMQLPQPKQPAFFINVVVEDSVLPYSRQELHSSNDLTLSSTHGR	795

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6999g00018	795	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	22	296	IPR001223	GO:0005975
	Vium6999g00018	795	Gene3D	Phosphorylase Kinase; domain 1	450	552	-	-
	Vium6999g00018	795	ProSiteProfiles	Protein kinase domain profile.	477	763	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6999g00018	795	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	287	777	-	-
	Vium6999g00018	795	CDD	STKc_IRAK	483	748	-	-
	Vium6999g00018	795	SUPERFAMILY	Protein kinase-like (PK-like)	460	781	IPR011009	-
	Vium6999g00018	795	Gene3D	Glycosidases	23	293	-	-
	Vium6999g00018	795	SMART	serkin_6	477	748	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium6999g00018	795	Gene3D	Transferase(Phosphotransferase) domain 1	553	760	-	-
	Vium6999g00018	795	Pfam	PAN-like domain	336	370	IPR003609	-
	Vium6999g00018	795	CDD	GH18_hevamine_XipI_class_III	24	291	IPR045321	-
	Vium6999g00018	795	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	444	552	-	-
	Vium6999g00018	795	Pfam	Protein tyrosine and serine/threonine kinase	480	748	IPR001245	GO:0004672\|GO:0006468
	Vium6999g00018	795	FunFam	Acidic endochitinase SE2	22	293	-	-
	Vium6999g00018	795	Pfam	Glycosyl hydrolases family 18	24	280	IPR001223	GO:0005975
	Vium6999g00018	795	SUPERFAMILY	(Trans)glycosidases	20	289	IPR017853	-
	Vium6999g00018	795	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	598	610	IPR008271	GO:0004672\|GO:0006468
	Vium6999g00018	795	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	553	756	-	-
	Vium6999g00018	795	Pfam	Domain of unknown function (DUF3403)	750	795	IPR021820	GO:0004674

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6999g00018	Vium-Chr6999	88676	92316	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6999g00018	467	763	Receptor kinase-like Gene Family	AT4G23230	60.269	1.15e-124	385

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium6999g00018		PK_Tyr_Ser-Thr	3.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6999g00018	-		-	gmx:100794508	1183.7