Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6999g00017 ATGGAGTTTTGGCCGGAGTTTCTTGCGAGCAGCACCGGAAAAGAGTTTGTAGCAGGAGGGTTTGGAGGCACTGCCGGAATAATCTCCGGTTACCCTTTAGACACTCTCCGTGTGATGCAGCAGAACTCCTTCAACACCGCCTCCGCCTTCAGCATCCTCAGAAATGTGGTGGCCAATGAAGGACCAACCGCTCTCTACCGCGGCATGGCGGCACCTTTGGCCTCTGTTACCTTTCAGAATGCTATGGTTTTCCAAATTTACGCAATTCTTTCAAGGGCATTTAGTTCGTCCGATTTGGTTAACGATCCTCCTTCTTACAAGGGTGTTGCTTTAGGAGGATTTTGTAGCGGTGCCATACAGAGTATGATACTATCCCCTGTTGAGTTAGTTAAAATTCGGCTTCAGTTGCAGAACACAGGTCAATCCATAGAAACCCGAAAAGGTCCTATGAAGGTGGCAAAAAACATATGGAAAATAGAGGGTCTTCGTGGCATGTACCGGGGACTTGGGATCACCATGCTAAGAGATGCACCAGCACATGGTCTCTACTTTTGGACATATGAATATGCAAGGGAGAAGCTTCACCCTGGTTGTAGAAGAAGTTGTGAAGAGAGCCTGAATACTATGCTGGTATCAGGAGGATTAGCTGGGGTGGTGAGTTGGGTTTTGAGCTACCCTTTAGACGTTATAAAAACAAGATTGCAGGCTCAAACACTTTTTTCGCAGAAATACAGAGGCATTTTGGATTGCCTTAGGAAGAGTGTTAGAGAAGAAGGATATGAGGTGCTATGGAGGGGTTTAGGAACTGCAGTTGCTAGAGCTTTTGTGGTGAACGGTGCTATATTTTCTGCATATGAGATCACTCTGAGGTGTCTGTTTGATAAATAA 888 0.4595 MEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVMQQNSFNTASAFSILRNVVANEGPTALYRGMAAPLASVTFQNAMVFQIYAILSRAFSSSDLVNDPPSYKGVALGGFCSGAIQSMILSPVELVKIRLQLQNTGQSIETRKGPMKVAKNIWKIEGLRGMYRGLGITMLRDAPAHGLYFWTYEYAREKLHPGCRRSCEESLNTMLVSGGLAGVVSWVLSYPLDVIKTRLQAQTLFSQKYRGILDCLRKSVREEGYEVLWRGLGTAVARAFVVNGAIFSAYEITLRCLFDK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6999g00017 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 93 IPR018108 -
Vium6999g00017 295 SUPERFAMILY Mitochondrial carrier 12 286 IPR023395 -
Vium6999g00017 295 Gene3D Mitochondrial carrier domain 9 294 IPR023395 -
Vium6999g00017 295 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Vium6999g00017 295 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Vium6999g00017 295 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Vium6999g00017 295 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Vium6999g00017 295 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Vium6999g00017 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
Vium6999g00017 295 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 292 - -
Vium6999g00017 295 FunFam Mitochondrial arginine transporter BAC2 11 295 - -
Vium6999g00017 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 193 IPR018108 -
Vium6999g00017 295 Pfam Mitochondrial carrier protein 209 294 IPR018108 -
Vium6999g00017 295 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Vium6999g00017 295 Pfam Mitochondrial carrier protein 11 96 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6999g00017 Vium-Chr6999 85905 88137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6999g00017 1 295 Antiporters AT1G79900 69.831 5.86e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6999g00017 K15109 - gmx:100812034 533.102