Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6999g00004 AAAATCTTGCAGAATCAATGGAAAGAAATGTTTCCATGTTTGATATCTAAGGCAGCAACAGTCGATGTTATATGCAACGGAGAAGGTCCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGCTGAGCAGTGGGCAATCGTCGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCATCCCTCGTGAAATGCAGAAAACGCCCTTCCGGTTGCATTATTGAGGACAAGTCCAATGGCCACTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTTCACTCCTTGTATCGTACCATTGTGAACAGTGGCCTAGCCTTTGGAGCAAGGCATTGGATTACGACTCTACAACTTCAATGTGAGCGTCTGGTTTTTTTCATGGCAACTAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGCGCATCAAGCTTCCACACATGGACTAAGGTTACAAGCAAAAACGGGGAAGACATAAGGATAAGTTCTAGAAAGAATTTGAACGATCCTGGTGAACCTCTTGGGTTGATACTGTGCGCTGTTTGTTCTGTATGGTTGCCAGTCTCACAAAATGTTCTGTTTGATTTCTTGAGAGATGAAACACGCCGAAGTGAGTGGGATATCATGTCAAGTGGTGGGACAGTGCTGTCCATTGCAAATTTATCCAAAGGACAAGACCGAGGCAATGCAGTTACCATTCAAACAATTAAATTGAAAGAAAACAGTGTGTGGATACTACAAGATAGCTGCACAAATCCTTATGAGTCAATGGTGGTATATGCTTCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAACCTTGCCATACTGCCTTCGGGATTCTCTATAATTCCTGATGGCCTCGAGTCAAGACCATTGGTGATTACTTCAAGGCAGGAAGAGAAATATACCGAAGGAGGATCTTTGTTTACAATGGCATTCCAGATCCTGACTAATGCATCTCCCACAGCCAAGTTAACAGTGGAGGCTGTGGACTCTGTCAACACTCTTGTATCTTGTACATTGAGAAATATCAGAACATGCTTACAATGTGAAGAGGGCTAG 1239 0.435 KILQNQWKEMFPCLISKAATVDVICNGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSLYRTIVNSGLAFGARHWITTLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKNGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPVSQNVLFDFLRDETRRSEWDIMSSGGTVLSIANLSKGQDRGNAVTIQTIKLKENSVWILQDSCTNPYESMVVYASVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVITSRQEEKYTEGGSLFTMAFQILTNASPTAKLTVEAVDSVNTLVSCTLRNIRTCLQCEEG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6999g00004 412 SUPERFAMILY Bet v1-like 173 374 - -
Vium6999g00004 412 Gene3D - 34 147 IPR023393 -
Vium6999g00004 412 ProSiteProfiles START domain profile. 1 154 IPR002913 GO:0008289
Vium6999g00004 412 Pfam START domain 5 151 IPR002913 GO:0008289
Vium6999g00004 412 CDD START_ArGLABRA2_like 5 150 - -
Vium6999g00004 412 SUPERFAMILY Bet v1-like 5 151 - -
Vium6999g00004 412 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 407 IPR042160 -
Vium6999g00004 412 SMART START_1 1 151 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6999g00004 Vium-Chr6999 20556 23840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6999g00004 6 411 Homeobox Transcription Factor Family AT1G79840 67.971 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6999g00004 K09338 - gmx:100809926 783.482