Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6996g00011 ATGGAAGCGCCGGAATACTTCGTCGGAGGCTATTTTTCGGCCGGAGGAGCTGACCAATTCACTCAGCAGGATAAGCGCCATGCTGACCAGAAAATCGGTGAGTCTTTCGCCATTGATGACCTCCTCGACTTCTCCCACGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTAGCCGGGAACTCCACTGACTCCTCCACCGTCACTGCTGTTGACAGCTGCAACTCCTCAATTTCGGGCAGCGACAACCGCTTCGCCTCAGCCATTGTCCCTCGCGGCTACGCCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTACGATGATATGGCGGAACTGGAATGGCTCTCGAACTTCGTTGAGGACTCGTTCTCCGCCGAGGAGGAGTTGAAAACGCTGCAGCTACTGTCCGGCGCAGCTGCGTCCACCGCCATTGGCGCGAAACCGCAGACGCCAGAGTCCTCGTCCTCCACCGACACGCTGCCGCCGTTCGCTTCCGACGAAACCGCTCGAAACGCACCGTTTCTCCACACGGAGACGCCTCTCCCGGGGAAGGCGCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACACGCCTGCTTCGCCTGGTGGCACCGGAGCAAGAGAGGCCGCCGCAGGCGAAGGATTCACCGGTGAAGAAGAGAGAGGGAACGAATGCAGAGTGTTCCGGAAGGAAATGCCTGCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGGACGGGACCGATGGGACCGAAGACGCTGTGCAACGCATGCGGCGTGAGGTTCAAGTCCGGGCGGCTGGTTCCGGAGTACAGGCCGGCGGCGAGCCCGACATTCGTGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGATGCATCGACAGCAGCATCAGCAATTGATGAGTCAGAGTTCAATTTTCGGCGTATCAAACGGTGGAGACGAGTTCTTGATCCATCATCATCACCACCATCAGCACTGTGGGCCAGATTTTAGACACGTTATTTAG 1047 0.5941 MEAPEYFVGGYFSAGGADQFTQQDKRHADQKIGESFAIDDLLDFSHADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGSDNRFASAIVPRGYAGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGAAASTAIGAKPQTPESSSSTDTLPPFASDETARNAPFLHTETPLPGKARSKRSRAAPGDWSTRLLRLVAPEQERPPQAKDSPVKKREGTNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKEMHRQQHQQLMSQSSIFGVSNGGDEFLIHHHHHHQHCGPDFRHVI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6996g00011 348 PANTHER GATA TRANSCRIPTION FACTOR 33 311 - -
Vium6996g00011 348 MobiDBLite consensus disorder prediction 149 167 - -
Vium6996g00011 348 FunFam GATA transcription factor 226 313 - -
Vium6996g00011 348 MobiDBLite consensus disorder prediction 146 231 - -
Vium6996g00011 348 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Vium6996g00011 348 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
Vium6996g00011 348 MobiDBLite consensus disorder prediction 217 231 - -
Vium6996g00011 348 Gene3D - 233 317 IPR013088 GO:0006355|GO:0008270
Vium6996g00011 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 295 - -
Vium6996g00011 348 Coils Coil 296 316 - -
Vium6996g00011 348 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Vium6996g00011 348 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Vium6996g00011 348 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
Vium6996g00011 348 PIRSF Txn_fac_GATA_plant 19 324 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6996g00011 Vium-Chr6996 82815 84256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6996g00011 34 348 C2C2-Gata Transcription Factor Family AT4G32890 47.095 1.64e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium6996g00011 GATA 4.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6996g00011 - - gmx:100776605 628.246