Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6996g00007 ATGCCGGTGTTGCGTAACGGAGCGAACAGGGGCCGGGGAGCAGCGAAACAACAGGAGCGGCTGCAGAGTCCAGCAGTGGAAGGGGAGGCGATTGCGACGAGGACCCGGAGGCGGCGTGCAGCGGCAGCGGCGGCAGCAGTGCCGAAGACTAACAACAACAACGACAATAATAAGCACAAGCAACAACAACAGCACCCGCCGGTGCAGGTGGTGGTGGTAAATGAGCAAGTAGTTGTTTCTGCGAAGGAGGAAGAGAATCGGGGATTGGGGGAAGGTGTTGGTGCCGCTGGAGCGGAGAGGGAAGAGGTAGGCGAGAAAGAGATGGTTGGACATGTCAGCGGAGGTCGGAGCAATGACAAGGCCAATGCCGGTGGTGAAGATGATGCCAATACTCCCGAGGTTCCTCAGAAGATCCAAGTAGGTAATTCCCCTTGTTATAAAGTAGAAAGAAAACTTGGCAAGGGTGGATTTGGTCAGGTATATGTTGGACGACGCTGTAGTGGAAATTTGAATGAGAGAACTGGACCTGGGGCTGTAGAGGTTGCATTAAAACTTGAGCATAGAACTAGTAAGGGATGTACCTATGGACCACCCTATGAGTGGCAAGTGTACAACACTCTCGGTGGCAGTCATGGTGTCCCACAAGTACACTACAAGGGCAGACAGGGCGACTACTATGTCATGGTTATGGATATACTGGGACCTAGTCTGTGGGATGTTTGGAATAATAATAACTCCCATACGATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCTATATTGGAAAAAATGCACTCTCGAGGATATGTGCACGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACGTCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCTACTAAGTGGAGGGATAGTGCAACAGGCTCACATGTGGAATATGATCAAAGACCAGATGTGTTTAGAGGCACAGTCCGTTATGCTAGTGTTCATGCACATTTAGGGCGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACATTGATTTTTCTCCTCCGAGGTCGCCTTCCTTGGCAGGGATTCCAGGGAGAAAACAAAGGTTTTCTGGTTTGCAAGAAGAAGATGGGAACATCTCCAGAGATTATTTGCTGCTTTTGTCCCCAACCTTTTAAGCAGTTTGTTGAACATGTTGTGAACTTAAAGTTTGACGAAGAACCCAATTATGCAAAATATATTTCTCTATTTGATGGAATTGTTGGTCCTAACCCAGATATTAGACCAATTAATACAGAAGGTGCACAAAAGCTCATTGGCCATAAGAGAGGCCGGTTAGCGATGGAAGAAGAGGACGATGACCAGCCAAAAAAGAAGACTCGTATTGGTTTGCCAGCATCACAGTGGATAAGTGTTTACAATGCTCGTAGACCAATGAAACAAAGATATCACTATAATGTATCAGATGCAAGGTTATCCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATATATTAGCAGTGTTGCTTCATGTCAGAGCGTATGGGCATTAATCATGGATGCGGGGACAGGTTTCGCTGGCCAAGTTTACGAACTGTCACCCTTCTTCCTCCATAAGGAATGGATCGTGGAGCAATGGGAACTAGGTTACTACATCAGCGCAATTGCTGGAGCTGCAAATGGGAGCTCGCTAGTAGTAATGTCCAAGGGTACACAGTTTGTGCAGCAATCATACAAAGTCAGTGATTCATTTCCTTTTAAGTGGATTAACAAAAAGTGGAGGGAGGGATTTTACGTGACTTCAATGGCCACCTCAGGGCCGAGATGGGGAGTCGTCATGTCTCGTGGTGCAGGATATTCAGACCAGGTGATTGAACTAGACTTTCTGTATCCTAGTGAGGGAATTCACAAGCGGTGGGACAGCGGTTACAGAATCACATCTACTGCTGCAACTTGGGACCAAGCTGCTTTTGTCCTTAGTGTGCCAAGGAGGAAACCTTTAGATGAAACTCAGGAAACACTTAGGACTTCTGCTTTTCCTAGTACACATGTTAAGGAAAAGTGGGCTAAGAACCTCTACATTGCTTCTATATGCTACGGACGTACAGTTTCTTGA 2133 0.466 MPVLRNGANRGRGAAKQQERLQSPAVEGEAIATRTRRRRAAAAAAAVPKTNNNNDNNKHKQQQQHPPVQVVVVNEQVVVSAKEEENRGLGEGVGAAGAEREEVGEKEMVGHVSGGRSNDKANAGGEDDANTPEVPQKIQVGNSPCYKVERKLGKGGFGQVYVGRRCSGNLNERTGPGAVEVALKLEHRTSKGCTYGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYYVMVMDILGPSLWDVWNNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTSDEKKLFLVDLGLATKWRDSATGSHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMGTSPEIICCFCPQPFKQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDDQPKKKTRIGLPASQWISVYNARRPMKQRYHYNVSDARLSQHIEKGNEDGLYISSVASCQSVWALIMDAGTGFAGQVYELSPFFLHKEWIVEQWELGYYISAIAGAANGSSLVVMSKGTQFVQQSYKVSDSFPFKWINKKWREGFYVTSMATSGPRWGVVMSRGAGYSDQVIELDFLYPSEGIHKRWDSGYRITSTAATWDQAAFVLSVPRRKPLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6996g00007 710 MobiDBLite consensus disorder prediction 1 69 - -
Vium6996g00007 710 MobiDBLite consensus disorder prediction 82 138 - -
Vium6996g00007 710 Pfam Protein kinase domain 146 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6996g00007 710 ProSiteProfiles Protein kinase domain profile. 146 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6996g00007 710 FunFam casein kinase 1-like protein HD16 118 466 - -
Vium6996g00007 710 PANTHER CASEIN KINASE-RELATED 145 678 - -
Vium6996g00007 710 ProSitePatterns Protein kinases ATP-binding region signature. 152 184 IPR017441 GO:0005524
Vium6996g00007 710 Gene3D Transferase(Phosphotransferase) domain 1 112 467 - -
Vium6996g00007 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Vium6996g00007 710 MobiDBLite consensus disorder prediction 47 69 - -
Vium6996g00007 710 CDD STKc_CK1 146 422 - -
Vium6996g00007 710 SUPERFAMILY Protein kinase-like (PK-like) 145 426 IPR011009 -
Vium6996g00007 710 MobiDBLite consensus disorder prediction 98 113 - -
Vium6996g00007 710 SMART serkin_6 146 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6996g00007 Vium-Chr6996 33831 44442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6996g00007 227 422 MAP Kinase Kinase Kinase AT5G50180 24.121 6.28e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vium6996g00007 Pkinase 7.1e-16 CL0016