Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6993g00011 ATGGAAGACGAACACGTATGCATTGATGATCTTATTCAGCATATAGGTCCCGCCTCAACTATTCCTTTACCTGGAGCTTTTTATGGGGTGTTTGATGGCCATGGAGGTACAGACGCAGCTTTGTTCATAAGAAATAACATCCTCAAATTCATAGTTGAGGACTCCCATTTTCCAACTTGCGTGGGGCACGCAATTACAAGTGCGTTTCTGAAAGCAGATTATGCATTTGCAGATTCAAGTTCTCTTGATATCTCCTCTGGGACCACTGCTTTAACTGCTCTTGTATCCGGAAGGACCATGATAGTTGCCAATGCCGGGGACTGCAGAGCTGTACTGGGGAGGCGAGGTAGAGCAATTGAGATGTCAAAAGACCAGAAACCAGATTGCACTTCGGAAAGGCTAAGGATTGAGAAACTTGGTGGAGTGGTGTACGATGGATACCTGAATGGGCAGTTATCTGTTTCCCGTGCCTTGGGAGACTGGCACATGAAGGGTCCAAAGGGTTCTGCCTGCCCCTTGAGTTCTGAGCCAGAGCTGCAGGAAATCATCCTCACTGAGGATGACGAGTTCTTGATCATGGGCTGTGATGGCCTATGGGATGTAATGAGTAACCAATGTGCTGTGACCATGGCAAGGAAAGAACTAATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGCTGGTCAGAGAGGCTCTAAAGCGAAACTCGTGTGATAATTTGACTGTTATAGTGATATGTTTCTCCCCAGATCCTCCTCCTAGGATAGAGACACCTCCTTCTCGGGTCAGGAGGAGTATATCAGCAGAAGGCCTCAATTTACTTAAGGGTGTGTTGGATTGTTAG 846 0.4645 MEDEHVCIDDLIQHIGPASTIPLPGAFYGVFDGHGGTDAALFIRNNILKFIVEDSHFPTCVGHAITSAFLKADYAFADSSSLDISSGTTALTALVSGRTMIVANAGDCRAVLGRRGRAIEMSKDQKPDCTSERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSSEPELQEIILTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVICFSPDPPPRIETPPSRVRRSISAEGLNLLKGVLDC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6993g00011 281 SMART PP2C_4 4 246 IPR001932 -
Vium6993g00011 281 FunFam Probable protein phosphatase 2C 22 1 251 - -
Vium6993g00011 281 ProSiteProfiles PPM-type phosphatase domain profile. 1 248 IPR001932 -
Vium6993g00011 281 Pfam Protein phosphatase 2C 1 240 IPR001932 -
Vium6993g00011 281 SUPERFAMILY PP2C-like 1 249 IPR036457 -
Vium6993g00011 281 CDD PP2Cc 1 248 IPR001932 -
Vium6993g00011 281 Gene3D - 1 251 IPR036457 -
Vium6993g00011 281 ProSitePatterns PPM-type phosphatase domain signature. 27 35 IPR000222 GO:0043169
Vium6993g00011 281 PANTHER PROTEIN PHOSPHATASE 2C 1 246 IPR015655 GO:0004722|GO:0006470
Vium6993g00011 281 SMART PP2C_SIG_2 3 248 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6993g00011 Vium-Chr6993 32241 34612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6993g00011 1 280 PP2C-type Phosphatase Gene Family AT2G33700 82.206 6.94e-174 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6993g00011 K14803 - gmx:100778015 550.436