Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6993g00003 ATGGCTGCGAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGATGATAGTTTTCATTTTGAGAGGTTGCACATTGAGCCTCTGTATGATGCTTTTGTATGTCCATTGACGAAGCAAGTGATGCGTGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAGTGTAGGGAGAGTGGAAGGAGACTGGTTTGCCCTTTGACTCTTCAGGAGTTAAGAAGCGCAGAACTGAATCCAAGCATGGCTTTGCGTAACACCATTGAAGAGTGGACTACCAGGAATGAAGCTGCACAGCTGGACATAGCTCGCAGGTCGTTGAATATGGCGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTGCAGTACATCTGCCGAAGAAGTCGATCAAACAAACACACTGTCCGCAATGCAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGTGGAAGCCGTAAGGTTCGATGTAGAGCTCTGGAAACCCTTAGAGTCGTGGTAGAAGAAGATGATGAGAACAAGGAATTGTTGGCTGAAGGGGATACTGTGCGTACTATAGTGAAATTCCTTTCCAACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAACTCTCGAAGTCTGCTACCCTCTGTGGGAAGATTGGTTCAATCAACGGAGCCATTCTAATATTAGTAGGGATGACAAGCAGCAATTCAGAAGATCTTCTCACTGTTGGGAAGGCTGAGGAAACATTGTCGAATCTGGAGAGGTATGAGGCTAATGTTCGACAGATGGCTGAATGTGGTAGATTGCAGCCTCTTCTTAGCCAACTTCTTGAAGGTCCACCAGAAACCAAACTCGCCATGGCGGGATTCCTTGGGGAGCTGGTTTTAAACAATGATGTTAAAGTTCTTGTTGCTAGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAATCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGACCCAAGTGCAAAGATATTAATAGAGGCCGGAATACTTGCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAACCTTCTTCCCACACGATTGAAAGAGATCTCTGCTACGATTCTTGCCAGTGTTGTAAACTCTGGAGAAGACTTCTATTCCATTTCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACTGGTCCAGCCATAGAGTGCAAACTACTACAAGTTCTTGTTGGACTTACTACTTCTCCAACTACAGTTCTGAGTGTTGTGTCTGCTATCAAAAGCTCTGGTGCCACAATCAGTCTAGTTCAGTTCATTGAAGCACCACAGAAAGATCTGCGTCTGGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAACTGATGCACTACGTGGCTCAGTTGGACAGCTTGGAAGTCTAATAAAAGTCATATCAGAAAATACAGGGATCAGTGAAGAGCAGGCAGCGGCAGTCGGCCTTTTAGCCGATCTACCCGAAAGGGACTTGGGCCTCACAAGACAGCTACTAGATGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGATTGCCATCAGACAGCGAGAGATCAGAGGCAATCGCTTCATCACACCATTTCTTGAAGGGCTTGTGAAGATTGTTGCAAGGGTTACTTATGTCTTGGCTGAAGAACCTGATGCCATTGCACTCTGCCGTGACTACAACCTTGCTGCACTTTTCATTGACCTGCTTCAGTCGAATGGACTGGACAACGTGCAGATGGTATCTGCCACAGCTCTGGAGAATCTATCCATAGAGTCAAAAAACTTAACCAAATTACCGGAGGTGCCGCCGCCCAGCTATTGTGCTTCGGTGTTTTCATGCTTCAGCAAGCCGCCAGTGATAAGTGGATTGTGTAGGCTCCACAGAGGAATATGCTCTTTGAAGGACACGTTTTGCCTGTATGTAGGGCAGGCAGTGCCCAAGTTAGTAGGGCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTGGCTGCATTATCGACTTTGATAGATGATGGAGTAGACATAGAACAAGGGGTGGCAATTTTGGTTGAAGCAGAGGGAGTGAAGCCTATACTTGATGTGCTACTTGAGAAGAGAACAGAGACATTGAGAAGGAGAGCAGTTTGGGCAGTGGAGAGACTGTTGAGAACGGATGATATAGCCTGTGAGGTTTCTGCAGACCAGAATCTGAGCACTGCACTTGTGGATGCATTCCAACATGGTGATTATCGAACTAGACAGACCGCTGAGCGTGCTCTCAAACATGTTGATAAGATACCAAACTTCTCAGGAATCTTTCAGAACCTAGGATGA 2442 0.4537 MAASWDGSNDPGSQSDDSFHFERLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRRLVCPLTLQELRSAELNPSMALRNTIEEWTTRNEAAQLDIARRSLNMASPENETLQALKYVQYICRRSRSNKHTVRNAGLIPMIVDMLKSGSRKVRCRALETLRVVVEEDDENKELLAEGDTVRTIVKFLSNELSKEREEAVSLLYELSKSATLCGKIGSINGAILILVGMTSSNSEDLLTVGKAEETLSNLERYEANVRQMAECGRLQPLLSQLLEGPPETKLAMAGFLGELVLNNDVKVLVARTVGSSLINIMKSGNMQSREAALKALNQISSCDPSAKILIEAGILAPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFYSISFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGQELTDALRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGLTRQLLDEGAFVMVISRVIAIRQREIRGNRFITPFLEGLVKIVARVTYVLAEEPDAIALCRDYNLAALFIDLLQSNGLDNVQMVSATALENLSIESKNLTKLPEVPPPSYCASVFSCFSKPPVISGLCRLHRGICSLKDTFCLYVGQAVPKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVAILVEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIACEVSADQNLSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFQNLG 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6993g00003 813 SUPERFAMILY ARM repeat 461 811 IPR016024 -
Vium6993g00003 813 Pfam Armadillo/beta-catenin-like repeat 682 711 IPR000225 GO:0005515
Vium6993g00003 813 CDD RING-Ubox_PUB 30 87 IPR045210 -
Vium6993g00003 813 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 711 IPR000225 GO:0005515
Vium6993g00003 813 Gene3D - 320 486 IPR011989 -
Vium6993g00003 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 109 IPR013083 -
Vium6993g00003 813 Gene3D - 116 319 IPR011989 -
Vium6993g00003 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 809 - -
Vium6993g00003 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Vium6993g00003 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Vium6993g00003 813 SUPERFAMILY RING/U-box 23 110 - -
Vium6993g00003 813 SMART arm_5 265 306 IPR000225 GO:0005515
Vium6993g00003 813 SMART arm_5 717 759 IPR000225 GO:0005515
Vium6993g00003 813 SMART arm_5 181 221 IPR000225 GO:0005515
Vium6993g00003 813 SMART arm_5 347 392 IPR000225 GO:0005515
Vium6993g00003 813 SMART arm_5 139 179 IPR000225 GO:0005515
Vium6993g00003 813 SMART arm_5 590 631 IPR000225 GO:0005515
Vium6993g00003 813 SMART arm_5 307 346 IPR000225 GO:0005515
Vium6993g00003 813 SMART arm_5 675 713 IPR000225 GO:0005515
Vium6993g00003 813 Gene3D - 573 804 IPR011989 -
Vium6993g00003 813 SUPERFAMILY ARM repeat 119 444 IPR016024 -
Vium6993g00003 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6993g00003 Vium-Chr6993 14387 19531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6993g00003 2 813 U-box Gene Family AT1G76390 64.619 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6993g00003 - - gmx:100789746 1421.37