LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium698g00002	ATGGAGCTTGCTTCCGAGAGATCTGGTGACGGAGGAGGTGGACTCAAGGAAGAAAACAGAACTGATGAGCATACTGTTGCTGATGATGAAGATGGTCCTCGTAGACAAGAAATTATTCTAGAGGAAGCACCCATAGAGGAGGCTGGACCTAGCACATCAGCAGACAAAAAGGAAGAGGTTGATGATCAACTTGAGAGCACGAAAAGTGAAATGGGTGTGGTGAGAGAAGAAAATGAACGGTTAAAGAGGTCTCTGCACAAAATAATGAATGAGTATCGGACACTGGAAATGCAATTTCAAGACATACTTAAGCAAGGGACGAAAAGGAAAAACGGTAACGAAGAAGACACAGTAGAGGAATCGGATCTAGTTTCTCTGAGCCTAGGAAGAGTTCCGAGCAATCAAAGAAACGAAGAGAAAACAAAGGTTTATAAGGCATTGAAGGATGATGAAGGGTTTAACCAAGAGTTGACTCTCGGACTAGAGTGCAAATCAAAGTCGGGAAGCACAACTGAAGCTTTGCCTAATCCAAGCCCAGAAAACAGTTCTGAAGTTCGAAAGGAAGAAGCTGGGGAAACTTGGCCACCCAGTAAGGACACACAGAAGGCAATTAGGGACACAGAAGATGAAGTTGCTCAGCAAAACCCTATGAAGAAGCCACGAGTTTGCGTTAGAGCAAGATGTGACACTCCAACAATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATCGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACCATTGCACCATCATGTCCAGTCAGAAAACAGGTGCAAAGATGTGTCGATGACATGTCCATTTTAATTACGACATATGAAGGGACCCACAACCACACTCTTCCACCTTCGGCTACTGCCATGGCATCCACAACTTCTGCAGCAGCCTCCATGCTTCTTTCTGGTTCTTCAACCTCTCTCTCTGCCTCAGCACCGTCAACAACAGCAACCAATCTCCACGGCCTCAATTTCTATCTATCAGATGGTGCAAAACCAAGGCAATTATACCTGTCAAACCCTGCACTGTCGTCTTCACCTTCACATCCAACCATCACTCTCGACCTCACTTCACACCCAGCTTCTTCTTCCTCATCACCCTTCGTTAGATTCGCTTCAAACTACAACCAACCCAGATACCCCTCTTCCTCAAGCCTAAGCTTCAGTACTTCCTCAGAAATCAACGCCTTGTCTTGGAGCAACGGCTTCCTTACCAATAATAATACTATTCAACCTACATACAATAGCAGGAACATACTTGGGAATGTAAACTTTGGGAGGCAACAAGTGGAAAATATATACCAATCCTATCTGCAAAAGAACAACAGCAATATTCCAAGCGTTCCTCAAGGTGGTGTACCGGCTGATACTATATCTGCAGCAACGAAAGTGATCACGGCAGACCCCACTTTTCAATCAGCTTTGGCAGCAGCCCTCACTTCGTTTATTGGTGGCGGTGTTCGAGGAAATCAAGGAGGTAACAGTGTTGGTGAAAGTCCAAGTTTGGGTCAGAACTTGAAGTGGGGTGAGGTGTTTGCAGCGTCTAATAATTCATCTTCTACCTTGTCTTGTTCAACTTCGAAAGTCAATGGTTGTGCATCGAGCTTCTTGAACAAAACGCCAGCGAATAATACACAGACGAAAAGTTTGGTGTTTCTACCGCCGTCGTCTTTGCCGTTTTCTACCCCCAAAAGTGCATCTGCGTCTGCATCTGCATCTCCGGCTGATAATAGCGACACCACCAATTAA	1782	0.4529	MELASERSGDGGGGLKEENRTDEHTVADDEDGPRRQEIILEEAPIEEAGPSTSADKKEEVDDQLESTKSEMGVVREENERLKRSLHKIMNEYRTLEMQFQDILKQGTKRKNGNEEDTVEESDLVSLSLGRVPSNQRNEEKTKVYKALKDDEGFNQELTLGLECKSKSGSTTEALPNPSPENSSEVRKEEAGETWPPSKDTQKAIRDTEDEVAQQNPMKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSLSASAPSTTATNLHGLNFYLSDGAKPRQLYLSNPALSSSPSHPTITLDLTSHPASSSSSPFVRFASNYNQPRYPSSSSLSFSTSSEINALSWSNGFLTNNNTIQPTYNSRNILGNVNFGRQQVENIYQSYLQKNNSNIPSVPQGGVPADTISAATKVITADPTFQSALAAALTSFIGGGVRGNQGGNSVGESPSLGQNLKWGEVFAASNNSSSTLSCSTSKVNGCASSFLNKTPANNTQTKSLVFLPPSSLPFSTPKSASASASASPADNSDTTN	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium698g00002	593	SMART	WRKY_cls	233	293	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium698g00002	593	MobiDBLite	consensus disorder prediction	106	140	-	-
	Vium698g00002	593	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	49	509	IPR044810	GO:0003700
	Vium698g00002	593	Pfam	WRKY DNA -binding domain	234	291	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium698g00002	593	MobiDBLite	consensus disorder prediction	51	78	-	-
	Vium698g00002	593	MobiDBLite	consensus disorder prediction	165	181	-	-
	Vium698g00002	593	MobiDBLite	consensus disorder prediction	1	78	-	-
	Vium698g00002	593	Coils	Coil	57	98	-	-
	Vium698g00002	593	MobiDBLite	consensus disorder prediction	182	202	-	-
	Vium698g00002	593	FunFam	probable WRKY transcription factor 31	218	295	-	-
	Vium698g00002	593	ProSiteProfiles	WRKY domain profile.	228	294	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium698g00002	593	MobiDBLite	consensus disorder prediction	571	593	-	-
	Vium698g00002	593	MobiDBLite	consensus disorder prediction	11	42	-	-
	Vium698g00002	593	SUPERFAMILY	WRKY DNA-binding domain	226	294	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium698g00002	593	Gene3D	WRKY domain	218	295	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium698g00002	593	MobiDBLite	consensus disorder prediction	165	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium698g00002	Vium-Chr698	15387	19490	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium698g00002	32	499	WRKY Transcription Factor Family	AT1G18860	40.481	6.28e-85	273

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vium698g00002		WRKY	1.9e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium698g00002	-		-	pvu:PHAVU_003G192000g	963.755