Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6979g00014 ATGGGAAGAACACCATGTTGTGACAAGAAGGGTTTGAAGAAGGGACCTTGGACAGCTGAAGAAGATGAAATTCTTGCTAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACAAACTATCTCAGACCTGACATCAAGCGTGGTCCCTTTACTCAAGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCTTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGACTTGACCCTCGAACTCACGAGCCATTGGTCTCATCTCCATCTTACCCCTTCCACAAGGCACATGCATCTGTGTCCACACGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAGGCCAGGCTCTCAAATGAGTCAACAAGGTTCAGCCACAACACCACCAATCCTAATTCAGATACCAAAACCACTGACTCTGACTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTGTTCATCACAAAGCTGATGACAACAAAATCACCACTACCAGCTCCTGCCCCAGTCCCCTCTCTGCAGGATCATCTTCCAACAAGTGTGAGTCAGTTGGAATAAATGCAGATTTGGCTTCCATTGCACAAGAAACCACGCCCTCTAACATTGTGAAACAAGAGTTTGAGTGGAGGATTCGTGGATCTGATTCTTCAAGCTCTAATGACATGGAGGATTCATCAGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGGAAACTCTTTTATGTGTCCACTTTAG 924 0.4556 MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTQEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPRTHEPLVSSPSYPFHKAHASVSTRHMAQWESARLEAEARLSNESTRFSHNTTNPNSDTKTTDSDYFLRIWNSEVGEAFRNVVHHKADDNKITTTSSCPSPLSAGSSSNKCESVGINADLASIAQETTPSNIVKQEFEWRIRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFMCPL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6979g00014 307 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium6979g00014 307 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vium6979g00014 307 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vium6979g00014 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vium6979g00014 307 FunFam MYB transcription factor 70 117 - -
Vium6979g00014 307 Gene3D - 70 132 - -
Vium6979g00014 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
Vium6979g00014 307 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vium6979g00014 307 SMART sant 67 115 IPR001005 -
Vium6979g00014 307 SMART sant 13 64 IPR001005 -
Vium6979g00014 307 Gene3D - 11 68 - -
Vium6979g00014 307 CDD SANT 16 62 IPR001005 -
Vium6979g00014 307 FunFam Myb transcription factor 11 68 - -
Vium6979g00014 307 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium6979g00014 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium6979g00014 307 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6979g00014 Vium-Chr6979 108099 110914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6979g00014 1 301 MYB Transcription Factor Family AT3G61250 64.918 2.76e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium6979g00014 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6979g00014 K09422 - gmx:100800408 547.74