LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6979g00010	ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTACACCTTACCATAAGAACTGCTTCCGATGCAGTCACTGCAAGGGATACCTCACGATGAGCACATACTCTTCAATGGACGGTGTCCTCTACTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGACAGCAAGGTCTTCTGAAAAACAAAATGAGATGAATAAGACCCCCAACCGACTCTCGTCCATGTTCAGTGGAACTCTAGACAAATGTTCAGTTTGCTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTATCACAAGACTTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCTTCCTATGCTTCCCTAGACGGTGTTCTCTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTACCATCATGTACTCCAAGCTGCTGCAAACAGGAAGAATGCCACACCGCCTCCTGAACCAGCCGAAGAAGAAGAACCACCAAAGCCAGAGGAAGCTGAACAGGAAGAAACAGAAGAAAAATCCTGA	627	0.4498	MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTARSSEKQNEMNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKTCFRCAHAGCHLTHSSYASLDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKNATPPPEPAEEEEPPKPEEAEQEETEEKS	208

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6979g00010	208	MobiDBLite	consensus disorder prediction	191	208	-	-
	Vium6979g00010	208	Pfam	LIM domain	10	65	IPR001781	-
	Vium6979g00010	208	Pfam	LIM domain	106	161	IPR001781	-
	Vium6979g00010	208	SMART	lim_4	9	61	IPR001781	-
	Vium6979g00010	208	SMART	lim_4	105	157	IPR001781	-
	Vium6979g00010	208	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Vium6979g00010	208	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Vium6979g00010	208	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	98	131	-	-
	Vium6979g00010	208	Gene3D	Cysteine Rich Protein	102	170	-	-
	Vium6979g00010	208	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Vium6979g00010	208	MobiDBLite	consensus disorder prediction	175	208	-	-
	Vium6979g00010	208	PANTHER	OS06G0237300 PROTEIN	6	87	-	-
	Vium6979g00010	208	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Vium6979g00010	208	ProSiteProfiles	LIM domain profile.	104	164	IPR001781	-
	Vium6979g00010	208	FunFam	LIM domain and actin-binding 1	100	170	-	-
	Vium6979g00010	208	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	132	171	-	-
	Vium6979g00010	208	Gene3D	Cysteine Rich Protein	5	72	-	-
	Vium6979g00010	208	FunFam	LIM domain and actin-binding 1	4	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6979g00010	Vium-Chr6979	87044	89412	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Vium6979g00010		LIM	1.4e-09	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6979g00010	-		-	gmx:100779513	367.081