Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6979g00005 ATGAACATGGATATGGCTTGTGGTTTACCGCAGTCAAGGGTGTTGCACGGAGGTGTGGGGACGAGTTACAGACACAGATCAGTTGGTCAGTTAGGTTGTTTTGATTTTAGAGGGAGAGGTTTTGGTTGTGTTGGATTTGACAGCTCGAGAAGTGTTTCAAAATTTCGTGTTAGTGGAGTGAATGCTTCTGCTTGTTGGAGTAATTCCAGGGTGTTTACAGGTAGGGAGTTTAAATTTTTGAATATTGAGAGAAGTTTGTCTTGTAAGAATAATAATCTTTTTACGGGGTCTAGAGTGATTTGGTCGAAGTGCCAGGGTAATGACTCTTTAGCTTATGTTACTGGCAACGGTCGGACTGTTGATTACGTGGAAGGTTCAGGTGAGGATGCAGGATTGGAGTCTGTTTCTAGTGTTGAATCTGATGCACCTTTGGAAGAAGCAGATCAAGCAGGAAGAAAAGAGGGAGGGAGTGAAATAGGATCAGAGGAACCAAGTGTGGATGAATTGAAAGAACTATTGCAAAAGGCCAGGAAGGAGCTAGAAGTAGCTCAAATAAATAGTACCATGTTTGAAGAAAAGGTTAAAAAAATATCAGAGACTGCCATTTCTTTGCATGATGAAGCTGTGATTTCTTGGAATGCTCTTAATTCTACCCTTGACACCATCAAAGATCTAGCTAATGAAGAGCTTATGGCCAAAGAAGCTGTCCAAACTGCAACAATGGCTCTTTCATTAGCTGAGGCAAGACTTCAAGTAGCCATAGAATCTTTGGAGCCTACAAAAGAAGTTCCTGATTCAACACAAGGGTCTAATGAGAGCAATGGTGATAACGACATGGAGGAACATGAGAAAGCTATTTTGTTTGCTGAAGCAGATATCAAGGAATGCCAGGCTAACTTAGCCAATTGTGAGGCAGAGCTGAGGCGCTTGCAAAATAGGAAGGAAGAGTTGGAGAAGGAAGTGAGCAAATTGCAAGAAATTGCTGAAAATGCTCAGCTGAATGCTGTGAAAGCTGAAGAGGATGTTACAAACATAATGCTTTTGGCTGAGCAAGCTGTTGCCTTTGAACTTGAGGCAACAAAACATGTAAATGATGCAGAGATTGCCTTACAACGAGCAGATAAGTCTAATTCTAGTTCAAATGCTGATACGATAGAAACTACCCAAGCACCCGATGTTGAGGCTATTCTTGAGGAGGAAAAAGTGGTTAACTGTTTTTCTGGTGATGTCACTGTTGAAAGAGACAGAGAATTGTCAATTGATGATGAATATTTGGTTGCGAATTTATCACCTGAAACACTATCTGATAAAGCCAACCAAATTTTGGAAGATAAAACACCGTCTGATTATTTAAGTGATAATGAGAATGCCATACAAGCAAAAAAGCAGGAAACACAGAAAGATTTAACCAAAGATAGTTCACCTTTTGCTCCCAAGGCATTATTGAAAAAGTCTTCTCGATTCTTTTCTGCGTCATTCTTTTCTTTTACCGAAGATGGGACTGAGTTCACACCAGCATCAGTCTTTCAGGGCCTTATAATATCTGTACAGAAGCAGTTGCCGAAGCTGATTTTTGGGCTCTTGTTAATGGGAGCAGGGGTTACCTTCTTTGCTAATAAAGTGGATAGGAATGCTCAGCTGCTTCCCCAGGCAGACGTTATCATGACCAGTGTTGAAGAAGTTTCCTCTAGTGCAAAGCCGCTTGTTAGACACCTACAGAAACTGCCCAAGAAAATCAAGAAAATCATTGCGTCTTTACCTCATCAAGAGGTGAATGAGGAAGAAGCCTCCCTCTTTGACATGCTCTGGCTATTACTTGCAAGTGTTATATTTGTGCCAATATTCCAGAAAATTCCTGGAGGCAGTCCTGTTCTTGGCTATTTGGCCGCTGGTATCTTGATTGGGCCATATGGTCTCTCTATCATTCGTCACGTACATGGCACAAAAGCAGTAGCTGAATTTGGAGTTGTTTTCCTTCTATTCAATATTGGCCTAGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCACAGGTCTTGGCAACTGCTGTAGCTATTGGTTTGGTGGTTCATTTTATTTGTGGCCAACCTGGTCCTGCTGCTATTGTTGTTGGGAATGGCCTTGCATTATCATCCACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGGCATGGCCGAGCTACTTTTTCTGTGTTACTCTTTCAGGATCTGGCTGTTGTGGTGTTGCTAATTCTCATACCTCTTATTTCTCCCAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCTATTGCTGAAGCACTTGGAATGGCTGCTGTTAAGGCAGCAGTTGCAATCACTGCCATAATTGCAGGGGGACGATTGCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCTGAAATTTTCTCAGCCAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACGGCCAGGGCTGGACTTTCCATGGCATTAGGAGCCTTTTTGGCTGGTTTACTGCTGGCAGAAACTGAATTTTCGTTACAGGTTGAATCTGACATTGCTCCATATCGTGGCCTTCTTTTAGGGCTATTCTTTATGACGGTTGGAATGTCAATAGATCCAAAACTTCTTGTATCAAACTTCCCAATCATCGGAGTTACACTAGGACTCTTAATATGTGGCAAGACTATCTTGGTTTCTTTGATGGGTAGAATGTTTGGGATTTCCTTCATTTCTGCCATCAGAGCTGGTCTTCTTCTTGCTCCTGGTGGAGAGTTTGCATTTGTGGCTTTTGGTGATGCCGTTAATCAGGGCATAATGTCTTCCCAGCTATCATCTTTGCTTTTTCTTGTTGTGGGCATTTCAATGGCCATCACACCATGGCTAGCAGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAGAATGATGTTAGAAGACTATTACCTGAAGAAAGTGAGACAGATGATCTGCAAGATCATATTATTATTTGTGGATTTGGACGAGTGGGCCAGATCATTGCCCAACTTCTTTCTGAGCGTCTTATTCCGTTCGTCGCACTAGATGTAAGGAGTGATAGAGTTGCAGTTGGCCGTGGTCTGGGTCTGCCTGTGTATTTTGGGGATGCTGGTAGTAGAGAGGTCTTACATAAACTTGGAGCTGAAAGGGCATGTGCTGCAGCAATAACACTCGATACACCTGGTGCAAATTATAGAACAGTCTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACCTTTGTCCGTGCCCATGACGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCCACTGCTGTCGTACCAGAGACTTTGGAACCAAGTCTTCAACTTGCAGCTGCTCTGCTTTCTCAGGCCAAACTCCCCACGACGGAGATTGCAGCCACTATAAATGAATTCAGAACTCGACATCTGGCTGAGCTCTCAGAGCTGTGTGAAGCAAGTGGAAATTCTCTGGGTTACGGATATAATAATAATAATAAAATTGCGGGAAAACCAAAATCCCAATCAACAGATTCATTAGACGAGACCCCTGTTTCTGAAGGCACACTGGCAATATGA 3618 0.4281 MNMDMACGLPQSRVLHGGVGTSYRHRSVGQLGCFDFRGRGFGCVGFDSSRSVSKFRVSGVNASACWSNSRVFTGREFKFLNIERSLSCKNNNLFTGSRVIWSKCQGNDSLAYVTGNGRTVDYVEGSGEDAGLESVSSVESDAPLEEADQAGRKEGGSEIGSEEPSVDELKELLQKARKELEVAQINSTMFEEKVKKISETAISLHDEAVISWNALNSTLDTIKDLANEELMAKEAVQTATMALSLAEARLQVAIESLEPTKEVPDSTQGSNESNGDNDMEEHEKAILFAEADIKECQANLANCEAELRRLQNRKEELEKEVSKLQEIAENAQLNAVKAEEDVTNIMLLAEQAVAFELEATKHVNDAEIALQRADKSNSSSNADTIETTQAPDVEAILEEEKVVNCFSGDVTVERDRELSIDDEYLVANLSPETLSDKANQILEDKTPSDYLSDNENAIQAKKQETQKDLTKDSSPFAPKALLKKSSRFFSASFFSFTEDGTEFTPASVFQGLIISVQKQLPKLIFGLLLMGAGVTFFANKVDRNAQLLPQADVIMTSVEEVSSSAKPLVRHLQKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAVAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAVAIGLVVHFICGQPGPAAIVVGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGMAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPIIGVTLGLLICGKTILVSLMGRMFGISFISAIRAGLLLAPGGEFAFVAFGDAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQNDVRRLLPEESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRGLGLPVYFGDAGSREVLHKLGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAALLSQAKLPTTEIAATINEFRTRHLAELSELCEASGNSLGYGYNNNNKIAGKPKSQSTDSLDETPVSEGTLAI 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6979g00005 1205 MobiDBLite consensus disorder prediction 1182 1205 - -
Vium6979g00005 1205 FunFam K(+) efflux antiporter 2 chloroplastic 1002 1166 - -
Vium6979g00005 1205 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1003 1144 IPR036291 -
Vium6979g00005 1205 FunFam K(+) efflux antiporter 2 chloroplastic 594 980 - -
Vium6979g00005 1205 Pfam TrkA-N domain 1007 1120 IPR003148 GO:0006813
Vium6979g00005 1205 Gene3D - 1002 1166 - -
Vium6979g00005 1205 ProSiteProfiles RCK N-terminal domain profile. 1006 1128 IPR003148 GO:0006813
Vium6979g00005 1205 MobiDBLite consensus disorder prediction 257 278 - -
Vium6979g00005 1205 Coils Coil 166 193 - -
Vium6979g00005 1205 Pfam Sodium/hydrogen exchanger family 604 974 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium6979g00005 1205 MobiDBLite consensus disorder prediction 1182 1197 - -
Vium6979g00005 1205 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 200 1178 - -
Vium6979g00005 1205 Coils Coil 279 341 - -
Vium6979g00005 1205 MobiDBLite consensus disorder prediction 145 167 - -
Vium6979g00005 1205 Gene3D - 594 982 IPR038770 -
Vium6979g00005 1205 MobiDBLite consensus disorder prediction 134 167 - -
Vium6979g00005 1205 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 605 885 IPR004771 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6979g00005 Vium-Chr6979 25121 53304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6979g00005 3 1205 Inorganic Solute Cotransporters AT4G00630 64.749 0.0 1388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6979g00005 K03455 - gmx:100798822 1919.82