Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6973g00001 ATGGCCGCTTCCACCATGGCTCTCTCTTCGCCAGCATTGGCTGGTCAAGCCATAAAGCTGTCTCCTTCCACCCCGGACCTCTCCGGTGGAAGGATTTCGATGAGGAAGACGGCCTCCAAGTCGGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACCGTGTGAAGTACCTGGGCCCATTCTCGGGTGAGGCTCCTTCTTACCTGACGGGGGAATTCCCAGGTGACTATGGGTGGGACACTGCCGGGCTTTCTGCTGACCCGGAGACATTTGCTCGAAACCGTGAACTGGAAGTGATCCACTCTCGATGGGCGATGTTGGGGGCTTTGGGGTGTGTGTTCCCTGAACTGTTGGCCCGGAACGGTGTGAAGTTCGGGGAGGCGGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCACACAGGTGATATTGATGGGTGCAGTGGAGGGTTACCGCATTGCCGGTGGGCCTTTGGGTGAGGTGACTGACCCAATCTACCCGGGTGGGAGCTTCGACCCATTGGGCCTTGCTGATGACCCAGAGGCCTTTGCTGAATTGAAGGTGAAAGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAAGCCATTGTCACTGGCAAGGGACCTTTGGAGAACCTCGCCGATCACCTTGCCGACCCCGTCAACAACAACGCCTGGGCCTACGCCACCAACTTTGTCCCTGGAAAGTGA 795 0.5686 MAASTMALSSPALAGQAIKLSPSTPDLSGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6973g00001 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Vium6973g00001 264 MobiDBLite consensus disorder prediction 24 45 - -
Vium6973g00001 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
Vium6973g00001 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Vium6973g00001 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Vium6973g00001 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6973g00001 Vium-Chr6973 2833 3790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6973g00001 1 264 Chloroplast and Mitochondria Gene Families AT1G29930 88.390 6.41e-173 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6973g00001 K08912 - ccaj:109815895 528.865