Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6972g00006 ATGCATCATCTTCTACTTGTTTTCGTTCTTCTTCTTCTTACAGTGTTTGTAGTAAGAGTTGCATATTCTATCATTTGGGTTCCATGGATCATTGCACGTCACTTTCGTCTGCAAGGCATCACGGGACCTCCTTATCGTCTGATCAAAGGAAACACAGATGAGATCCACCGCATGTACAGGGAGGTTCAATCCAAGCCGATGGCTTTGTGCCACGACATCTTGGAGCGCGTGTGTCCATTCTATCACATGTGGTCACGCATGTATGGGAAAACTGTTTTGTACTGGCACGGGTCGAAGCCCAGACTGGTACTATCCGACCCGGATATGCTCAAAGAGATTCTTTTGAAAACGGGTGAATGGTTTGAGAGGATAGATCCGAACCCGTCGGTGAAACAGTTCTTTGGAGAAGGGATTTTGGTGTTGAAAGGAGAGAGATGGGCTGTGCATAGAGCAATCGCTAACCAGGCTTTTAAAATAGAACGTGTTAAGTTATGGGTTCCTGAAATCACTGATTGCACAAAAACAATGTTTTACAAGTGGGAAGATAAGAACAGAGGCAGTGATGAATTTGAGATTGAAGTGTGTAAAGATCTGCATGATCTTACATCTGATATTATATCCAAAGTTGCTTTTGGAAGTAACTATGAAGAAGGGAAGGGGATTTTTGAGTTACTAGAAGAACATTATCATTTGATCTCTTTAGCCATCAGAAGTGTTTATATTCATGGATTCAGATTTCTACCAACCAAGAAGAACAGAGAAAGAAAGAGGTTGGAGAAGAAAACATACGAAGCAATTAAGGTACTGATTGAGGAGAATCAAAAAGCAGAACATGATTCAGAAAACTTGCTTTCTCTGTTGATGTCTTCTCACAAATTCATCAACAACGAGACACATAAGTTAAGGTTGGATGAAATAGTGGATGATTGCAAGAATTTTTACATGGCTGGAAAGGAAACAAGTGCCACTTCATTAAGCTGGGCACTCTTCCTTTTAGGGTTAAATCAAGAATGGCAAAGCAAGGCACGTGAAGAGGTGTTGAATGTTCTTGGACCCAATTCTCTCCCAACTTCAGAAACATTAAGTGAACTCAAACTTGTTAACTTGATACTTCAAGAAACACTAAGACTGTACCCAAATCCAGGGGCATTGGTGAGGGAAGCAAGCAGAAGAGTTAAGTTGGGGAAGATTGATATTCCAGCTGGTACACAACTCTATTTGTCTATCACTTCGGCTCATCATGATACTGAGTTTTGGGGAGAAGATGCTCTTGAATTCAATCCTATGAGATTTGCAGAGCCTAGGAAGCATTTAGCTCCATATCTTCCCTTTGGATTAGGTCCTAACTATTGTGTGGGACAAAATTTAGCTGTCTTTGAAATGAAAATTGTACTTGCCATGCTGTTGCAGAGGTATTCTTTTTTTGTATCCCCTTCATATGCTCATGCTCCCATGTTGTTGATGACTATGACACCTCAATATGGCATGCAAATTATCTTTAGGAAACTGTGA 1512 0.4054 MHHLLLVFVLLLLTVFVVRVAYSIIWVPWIIARHFRLQGITGPPYRLIKGNTDEIHRMYREVQSKPMALCHDILERVCPFYHMWSRMYGKTVLYWHGSKPRLVLSDPDMLKEILLKTGEWFERIDPNPSVKQFFGEGILVLKGERWAVHRAIANQAFKIERVKLWVPEITDCTKTMFYKWEDKNRGSDEFEIEVCKDLHDLTSDIISKVAFGSNYEEGKGIFELLEEHYHLISLAIRSVYIHGFRFLPTKKNRERKRLEKKTYEAIKVLIEENQKAEHDSENLLSLLMSSHKFINNETHKLRLDEIVDDCKNFYMAGKETSATSLSWALFLLGLNQEWQSKAREEVLNVLGPNSLPTSETLSELKLVNLILQETLRLYPNPGALVREASRRVKLGKIDIPAGTQLYLSITSAHHDTEFWGEDALEFNPMRFAEPRKHLAPYLPFGLGPNYCVGQNLAVFEMKIVLAMLLQRYSFFVSPSYAHAPMLLMTMTPQYGMQIIFRKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6972g00006 503 Coils Coil 266 286 - -
Vium6972g00006 503 SUPERFAMILY Cytochrome P450 38 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PANTHER CYTOCHROME P450 FAMILY MEMBER 16 495 - -
Vium6972g00006 503 Gene3D Cytochrome P450 29 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS E-class P450 group I signature 85 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS E-class P450 group I signature 382 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS E-class P450 group I signature 109 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6972g00006 503 Pfam Cytochrome P450 81 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6972g00006 Vium-Chr6972 39228 42065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6972g00006 22 503 Cytochrome P450 AT1G75130 50.515 1.23e-176 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6972g00006 - - gmx:100789281 853.588