Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6968g00004 ATGGCTCAAGAAGCTGATGCATTTGTTGCTCTCCCTGGAGGATACGAAACCATGGAAGAGTTGTTGGAGATGATAACTTGGGCCCAACTTGTAATTCATAAAAAACCGGTGGAAATGCTTGAAGCAAAGGTGCAACATATGAAAGAGCAGAATCGTACTCTACGAATGATGGTGGAAATTATGAGCAAGAAATGCCAGAAGCTTCAACTTCATGTTCAAGAGATCAACAATGCAGAAAGTGAGTTTTCCACAGCACAGAAGGCATCGCAAATCTTTGTTAAAATCCCCCCCAACGACAATAGTTTGATAGTAAAAGATGGTTATGAGTGGAAGAAGTATGGTCAGAAGAAGACAACCAAAGACAATCCTTCACCCAGAGCTTATTACAAGTGCGCATTGGCTCCTACATGCCCTGTCAAGAAAAAGGTGCAAAGAAGCATACAGGATAAATCTATGGTTGTTGCAACTTACGAAGGAAAGCATAACCACGGTTTTCCTTTTCGTGATTTATTCAAGCCATCATCGGCTACACCCGAAGCCTCAATAATGGATAACGATTTACCTATGACAAACATATCAAACGACATCAACATCGACCTTTGTCTATGCAATCGTGTTCCAACAGATGTAACAGATAAACAGCAAAAGGACGGTGGCAGTAACATTAAAGTTCTGGAATGTGTAAGTTCTCTGCTAAAAGATCCTAACTTCATCAAACCATTAGCTGAAGCAGTTGTTCTCTCCATCAATACCCAGAGTAAGCAAGTGGGTCTTAACCTGAGTTTGGGTCTTCCTCAACCGCATTTGTCTAAGTGA 816 0.4118 MAQEADAFVALPGGYETMEELLEMITWAQLVIHKKPVEMLEAKVQHMKEQNRTLRMMVEIMSKKCQKLQLHVQEINNAESEFSTAQKASQIFVKIPPNDNSLIVKDGYEWKKYGQKKTTKDNPSPRAYYKCALAPTCPVKKKVQRSIQDKSMVVATYEGKHNHGFPFRDLFKPSSATPEASIMDNDLPMTNISNDINIDLCLCNRVPTDVTDKQQKDGGSNIKVLECVSSLLKDPNFIKPLAEAVVLSINTQSKQVGLNLSLGLPQPHLSK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6968g00004 271 SUPERFAMILY WRKY DNA-binding domain 101 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6968g00004 271 Pfam WRKY DNA -binding domain 105 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6968g00004 271 SUPERFAMILY MCP/YpsA-like 1 41 - -
Vium6968g00004 271 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 37 80 IPR044810 GO:0003700
Vium6968g00004 271 Pfam Possible lysine decarboxylase 1 59 IPR031100 -
Vium6968g00004 271 Coils Coil 37 57 - -
Vium6968g00004 271 Coils Coil 68 88 - -
Vium6968g00004 271 Gene3D WRKY domain 90 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6968g00004 271 ProSiteProfiles WRKY domain profile. 99 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6968g00004 271 SMART WRKY_cls 104 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6968g00004 271 Gene3D - 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6968g00004 Vium-Chr6968 21415 25186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6968g00004 86 246 WRKY Transcription Factor Family AT1G80840 45.143 1.83e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium6968g00004 WRKY 2.2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6968g00004 - - vum:124844429 546.969