Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium695g00012 ATGTATGAAGGGAATTCATCCTTTATTGTTCATATTTTTAATTTGAGTACCTCTGAGATAAATTATCAATCGGCTATGAGAAATCATATGGAAGGACCCTGCTTTGTCAATTACAATCATATTTTCGAGGAAATGGAAGACATAGATTCCATTGATTTGTCAGATTTGTCACCTTCGTATCTTACACCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTCTGCAGAATTTGTTCAATGGTGGCTCAAAACTGAATCGTGTAAACTGGGGTGATGGTGGGAGTTCTTACTCTTCTAAGAGTGCCAATTCACAAGGTAGCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACCGATGAATTGAAGTTGCGTTATTCTAACGAGGAAGCAGTCAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTGCGACCCTCCTATTTATATAGAGGATGCATAATGTACTTGCCTTCTTGCTTTGCGGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAGTTGTCCAATGGCAGACAGTGGTCGGTTCGCTGTCTCTACAGAGGAGGTCGAGCCAAGTTAAGCCAAGGATGGTTTGAATTCACCGTGGAGAACAATCTGGGGGAGGGTGATGTATGTGTGTTTGAGCTCCTTAGAACAAAGGAAGTTGTGCTGCAAGTTACTGTCTTTCACGTAACTGAAGATGCAAGCTTGTTGAACTCTCCTCCTGTGCAGCAGCTGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCATTTGCAACATCGCGTCAGCAGTACAGTGAAATTGATTAGAAATTAG 1059 0.424 MYEGNSSFIVHIFNLSTSEINYQSAMRNHMEGPCFVNYNHIFEEMEDIDSIDLSDLSPSYLTPGAMQNKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSSYSSKSANSQGSQSTRDIGVQFNAVEFKRSTDELKLRYSNEEAVNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFHVTEDASLLNSPPVQQLSQNMSHTKLLNPHLQHRVSSTVKLIRN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium695g00012 352 SUPERFAMILY DNA-binding pseudobarrel domain 209 309 IPR015300 -
Vium695g00012 352 MobiDBLite consensus disorder prediction 151 178 - -
Vium695g00012 352 CDD B3_DNA 214 308 IPR003340 GO:0003677
Vium695g00012 352 MobiDBLite consensus disorder prediction 151 168 - -
Vium695g00012 352 MobiDBLite consensus disorder prediction 103 123 - -
Vium695g00012 352 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 38 315 IPR044837 -
Vium695g00012 352 SMART B3_2 216 311 IPR003340 GO:0003677
Vium695g00012 352 ProSiteProfiles B3 DNA-binding domain profile. 216 311 IPR003340 GO:0003677
Vium695g00012 352 Pfam B3 DNA binding domain 219 308 IPR003340 GO:0003677
Vium695g00012 352 Gene3D - 193 313 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium695g00012 Vium-Chr695 69444 71365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium695g00012 2 312 B3 DNA Binding Superfamily AT3G18990 47.962 3.63e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium695g00012 B3 2.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium695g00012 - - gmx:100789352 595.504