Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium695g00010 ATGGCTCGTCCTTGTTTCCACAAGCTTGTTCTCTCCATCACTCTTCAATCCAGACAACTGAGGATTCCGGATATTTTTCTGAGGAAATATGGGACCCAGCTTTCTACAGTTGCTACCCTCACTGTTCCTGATGGTAGTATTTGGCGTATAGGATTGAAGAAAGCTGACAGCAAAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTCCAACGGTACTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCCTTTATTGTTCATATTTTTAATTTGAGTACCTCTGAGATAAATTATCAATCGGCTATGAGAAATCATATGGAAGGACCCTGCTTTGTCAATTACAATCATATTTTCGAGGAAATGGAAGACATAGATTCCATTGATTTGTCAGATTTGTCACCTTCGTATCTTACACCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTCTGCAGAATTTGTTCAATGGTGGCTCAAAACTGAATCGTGTAAACTGGGGTGATGGTGGGAGTTCTTACTCTTCTAAGAGTGCCAATTCACAAGGTAGCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACCGATGAATTGAAGTTGCGTTATTCTAACGAGGAAGCAGTCAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTGCGACCCTCCTATTTATATAGAGGATGCATAATGTACTTGCCTTCTTGCTTTGCGGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAGTTGTCCAATGGCAGACAGTGGTCGGTTCGCTGTCTCTACAGAGGAGGTCGAGCCAAGTTAAGCCAAGGATGGTTTGAATTCACCGTGGAGAACAATCTGGGGGAGGGTGATGTATGTGTGTTTGAGCTCCTTAGAACAAAGGAAGTTGTGCTGCAAGTTACTGTCTTTCACGTAACTGAAGATGCAAGCTTGTTGAACTCTCCTCCTGTGCAGCAGCTGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCATTTGCAACATCGCGTCAGCAGTACAGTGAAATTGATTAGAAATTAG 1305 0.4253 MARPCFHKLVLSITLQSRQLRIPDIFLRKYGTQLSTVATLTVPDGSIWRIGLKKADSKIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEINYQSAMRNHMEGPCFVNYNHIFEEMEDIDSIDLSDLSPSYLTPGAMQNKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSSYSSKSANSQGSQSTRDIGVQFNAVEFKRSTDELKLRYSNEEAVNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFHVTEDASLLNSPPVQQLSQNMSHTKLLNPHLQHRVSSTVKLIRN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium695g00010 434 Pfam B3 DNA binding domain 301 390 IPR003340 GO:0003677
Vium695g00010 434 Pfam B3 DNA binding domain 10 96 IPR003340 GO:0003677
Vium695g00010 434 SUPERFAMILY DNA-binding pseudobarrel domain 291 391 IPR015300 -
Vium695g00010 434 SMART B3_2 298 393 IPR003340 GO:0003677
Vium695g00010 434 SMART B3_2 6 98 IPR003340 GO:0003677
Vium695g00010 434 CDD B3_DNA 296 390 IPR003340 GO:0003677
Vium695g00010 434 CDD B3_DNA 4 96 IPR003340 GO:0003677
Vium695g00010 434 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Vium695g00010 434 MobiDBLite consensus disorder prediction 155 205 - -
Vium695g00010 434 MobiDBLite consensus disorder prediction 233 260 - -
Vium695g00010 434 Gene3D - 275 395 IPR015300 -
Vium695g00010 434 MobiDBLite consensus disorder prediction 233 250 - -
Vium695g00010 434 PANTHER B3 DOMAIN-CONTAINING 3 387 - -
Vium695g00010 434 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Vium695g00010 434 Gene3D - 1 99 IPR015300 -
Vium695g00010 434 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium695g00010 Vium-Chr695 69444 75060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium695g00010 1 394 B3 DNA Binding Superfamily AT3G18990 50.498 1.96e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium695g00010 B3 3.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium695g00010 - - gmx:100789352 743.421