Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6958g00001 ATGCAAACAAACGACATATTACACATATTTTTTAATAGCTCAGCCAATTCTATAAAAAAGGAAAACTTGTCTAAGCAGACAGATGGGAAAGGAAGGGAAGAGAAAACAAACAAAAGGAGAGAAAAGCAAAATCAAAATCAAAACAACAACTGCACAAAAGTGATAAGCATGGCTTCTAGAGACAAAAGAAGAGAGTCTCTGGAACAGACTTTGCAACAACTTCGCGATGTCACAAACTCAACTGCTCTGAACAAAGCTTCAATCATTGCAGATGCCTCAAAATACATAGAGGAGTTGAAACAAAAAGTGGAGGGACTGAACTCAGAGCTGGGGATCAATGAATCATCATCAAACTCTCAAATTGATGAACTACCTGCGGTAACTGTGAAAACCCTAAAGAAGGGTTTCCTCATTAACGTGCTTTTAGAGAACAATAGTCCTGGTATGCTCGTGTCTGTACTCGAAGCCTTCGAAGAACTTGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCTGTGGGAAGAGAAAGTCACAAGAACGACAGTGTTGACGCGCAAGTGGTAAAGCAAGCAGTGTTGCAAGCAATCAAGAAGGAGGACTAA 624 0.4071 MQTNDILHIFFNSSANSIKKENLSKQTDGKGREEKTNKRREKQNQNQNNNCTKVISMASRDKRRESLEQTLQQLRDVTNSTALNKASIIADASKYIEELKQKVEGLNSELGINESSSNSQIDELPAVTVKTLKKGFLINVLLENNSPGMLVSVLEAFEELGLDVLDARVSCEDSFQLEAVGRESHKNDSVDAQVVKQAVLQAIKKED 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6958g00001 207 ProSiteProfiles ACT domain profile. 138 207 IPR002912 -
Vium6958g00001 207 MobiDBLite consensus disorder prediction 20 48 - -
Vium6958g00001 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 112 IPR036638 GO:0046983
Vium6958g00001 207 MobiDBLite consensus disorder prediction 23 42 - -
Vium6958g00001 207 Coils Coil 57 77 - -
Vium6958g00001 207 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 26 204 - -
Vium6958g00001 207 CDD ACT_UUR-ACR-like 147 203 - -
Vium6958g00001 207 Gene3D - 52 124 IPR036638 GO:0046983
Vium6958g00001 207 Coils Coil 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6958g00001 Vium-Chr6958 7 1522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6958g00001 13 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 28.302 7.82e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6958g00001 - - vra:106759069 361.688