Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6957g00001 ATGAATTCCGACACGCAACACGGAACGCCGTCGTATTGGTGCTACAGCTGTACCCGCTTCGTTCATCTCTCGTCGCAGGCCACCATCGCCTGCCCCCACTGCCAGAGTGGCTTCGTCGAAGAGATCCGCGCCGAAGCCTCGCCGCGCCACCGTCTCAGCCCTTTCCCCGACGACCATCTTTCGCTCCGCCGACAGGGATTCCGCCGCCGCCGTCGCGATGCCGCTGGCAACCGCTCCCCCTTTAACCCCGTTATCGTTCTTCGGGGATCCGGCGATGACACCGCCGCCGAACACGAAGGCGCCAGCACCTTTGAGCTCTTCTACGACGACGGTGACGGCACTGGCCTCCGTCCTCTCCCGCCCACCATGTCGGAGTTCCTCCTCGGCTCAGGCTTCGACCGCCTACTCGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAACCCGCCGGCGTCCAAGGCGGCGATCGAGTCCATGCCGACGGTCGAGATCGGCGAAGCACAGGTCGAGACCGAGGCGCACTGCGCCGTCTGCAAGGAGGCGTTTGAGCTCCACGCGGAGGCGCGTGATTTACCCTTCAAACATATTTACCACTCTGATTGCATCCTCTTGTGGCTCTCCATGCGAAACTCGTGTCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGGGCTCCGAGTCAGATCGACGAGGAGGCGATAGGGTTGACTATCTGGAGGCTTCCAGGAGGTGGATTCGCCGTGGGTCGATTTTCTGGCGGACGCAGGGCCGGAGAGAATCATTTTCCGGTGGTGTATACGGAGATGGACGGGGGACTGAACACGAACGGAGCTCCGAGGAGGATTTCTCGGTCGGTGAGAAGCAGTAGGGTTAGGGAGAGTCGAGGATTTGGTAGGGTTGTTCGCAGCTTCTTTTCATTCTTTGGAAGGATCGGTTCTAGAAACTCTTCTTCGTCTTTGTCATCTTCTGAACATGGTTCCGTGAGTAGAAGCCGTAGTCGTGTGAGTTCAGTCTTCAGCAGAAGCTCACGGAGACATAGCAGAACTTTTGTTTTGGATGATTAA 1083 0.5891 MNSDTQHGTPSYWCYSCTRFVHLSSQATIACPHCQSGFVEEIRAEASPRHRLSPFPDDHLSLRRQGFRRRRRDAAGNRSPFNPVIVLRGSGDDTAAEHEGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGEAQVETEAHCAVCKEAFELHAEARDLPFKHIYHSDCILLWLSMRNSCPVCRHELPSDLETRAPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGENHFPVVYTEMDGGLNTNGAPRRISRSVRSSRVRESRGFGRVVRSFFSFFGRIGSRNSSSSLSSSEHGSVSRSRSRVSSVFSRSSRRHSRTFVLDD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6957g00001 360 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Vium6957g00001 360 MobiDBLite consensus disorder prediction 319 344 - -
Vium6957g00001 360 FunFam E3 ubiquitin-protein ligase RING1-like 141 226 - -
Vium6957g00001 360 SMART ring_2 179 219 IPR001841 -
Vium6957g00001 360 Pfam Ring finger domain 178 220 IPR001841 -
Vium6957g00001 360 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Vium6957g00001 360 Pfam Protein of unknown function (DUF1117) 240 350 IPR010543 -
Vium6957g00001 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 226 IPR013083 -
Vium6957g00001 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 224 - -
Vium6957g00001 360 SUPERFAMILY RING/U-box 159 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6957g00001 Vium-Chr6957 4151 5652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6957g00001 118 226 C3H Transcription Factor Family AT5G01980 44.954 2.56e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6957g00001 K11982 - gmx:100792874 517.694