Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6955g00024 ATGAGAACACGAAATGCTGATCCTGCTTCCAAATCAGCAACCCCCAAGAAGACGCCACCGCCGAGGAAATCCCCTGCGGCGAAGCGCACACCCGCCACCAAAACCAGAAGCACAAAGAAGAAAGAGGTCTCACCCGCACCCGATTCCAAAACCGATCAATCTACTGTGGAGCAGAAACCGGTAGCTAGTGGTAGCAGTACAAAAACTTCAAAAAGAAAGGCTCCAGGGAGACCTAGAGCTAAAGCAATTGATATTCCGAATTCGGAAGAACAACGTGAGGCAGTAGCTGATGAAACTCCTATTGAAGACAAAACCGAGGCTGCAGAGAAAGTGGAGGATGTTGCAGTTGTTGATGCAAATAGTATTGAGGTTGAGAAAGAGGGGGAACAAGATGTCGGGTTTTCTGAAGAGAAGGAACAGAAGTGGATGGAAGTGGATGAAGCTGTTGTTGAAAAGGGGAATGACATAATGGAAGTTGAAGTAACTGCTTCACAGGATGTTTCTGTTTCTTTTCAGCGACTACGGCGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGAGAAAGCAAAGGAAGTGTTCAAAGATCAAGAGGGGGACAAAGGAAAGGAGAAGTTGAAAGAACAGGAAGGAGATGGGGGGAAGGAAGAGGTGAAAGTGCATGAAGGGGACAAAGGAGAGGAAGAGTTGAAAGAACTGGAAGGAGACAAAGGAATGGAAGAGTTGAAAGAACTTGATGGGGAGAAAGAAAAAGAAGAGTTGAAAGGACCCGATGGAGAGGAAGGTAAGGAAGAGTTGAAAGAACATGAAGGAGAGAAAGGTAAGGAGGAATTGTTAGAACGGGAAGGAGAGCAAGGTAAAGAAGAGACGATAGAACAAGAAGGACATAAAGTAAAGGTTCAATTGAAAGAACAGGAAGTAGAAAAAGGGAAGTTGAAAGAGCAGGATCCAGCGAAAGCAGAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACACTGAGTCGCTTGGTGTAGAAGTGAAAGCCCAGGTGCAAACAGAAGATGCTAATCCCATTAAAGATGATGGTGAAGGACCCAAGAGTGGTAAAAAGTTAGATCTTCGAGGACAAGGGGAGGTGGAGCTTGCTGAAGAAGATCCGGAGGAAGATCCAGAAGAAGATCCAGAAGAACCTCTAGATGAAATTGGGACGTTGGAGGAGGAGCATAGGGAGTTGGAGGCCATAGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATTTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTCCAGAGGATGGGGGAGATACTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACGTGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTGAAGGACTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAGGGCTTGAGCCGGGGCTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTGTCTTTGGCCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATGCGTGAACCTGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTGAGGGAGCTATTTAAATCTTATGGTGAAATTGTAAGAATCGTCTTAGCACGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTTTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAAATGGGTGATGCGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAACCCTCTACCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGCAGCCTTTTCAAGACCAGTCCCTACTAGAGGGAGGGGGTTTGGACGAGGAAGGCAGCCCTTCAACAACAGGGGAAATTTCAACAGGGATAAGAGTTTCTATCACGGTGGACACAGTCAAATTGGAAGAATGGGATTTCGGGATGACGTTGATTTTAATATGCATACAGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCTGGTACCCGAGGTGCTCCATTTGCTGGACCGACTAGACCTTATCATGACAGAGCATGGTATGGTATGCCTGATGGAGGTCCCAGTGAGCCTATTCCTCCAAGGAGGACCTACTCCCCTGTTGGACAATTTGACATGCCTTTTATGGGAAGACATTTTGATGATCCTTATCTATATGATGACAATATGCATGGAATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGTTTGGATTATGCAGATCCTCCTATATTTCATGGAACTCGTCACCATGATTCTTTTGGGTCTGGCAGCGGACAGTACCCGCCTGACTACTATGCTTCCGATTACGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTAA 2784 0.4454 MRTRNADPASKSATPKKTPPPRKSPAAKRTPATKTRSTKKKEVSPAPDSKTDQSTVEQKPVASGSSTKTSKRKAPGRPRAKAIDIPNSEEQREAVADETPIEDKTEAAEKVEDVAVVDANSIEVEKEGEQDVGFSEEKEQKWMEVDEAVVEKGNDIMEVEVTASQDVSVSFQRLRRPIMDLNISADNEDCTGEKEGEKAKEVFKDQEGDKGKEKLKEQEGDGGKEEVKVHEGDKGEEELKELEGDKGMEELKELDGEKEKEELKGPDGEEGKEELKEHEGEKGKEELLEREGEQGKEETIEQEGHKVKVQLKEQEVEKGKLKEQDPAKAEGEETNLFGHEENTESLGVEVKAQVQTEDANPIKDDGEGPKSGKKLDLRGQGEVELAEEDPEEDPEEDPEEPLDEIGTLEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRMGEILEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVVFGHAERTAKVAFAEPMREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFFTHEAAVACVDGVNKSEMGDAASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPVPTRGRGFGRGRQPFNNRGNFNRDKSFYHGGHSQIGRMGFRDDVDFNMHTDFRQRQFGPQGAVRGGHYAGTRGAPFAGPTRPYHDRAWYGMPDGGPSEPIPPRRTYSPVGQFDMPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTRHHDSFGSGSGQYPPDYYASDYGRGSYSSYYGGDGSHGHGYYY 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6955g00024 927 MobiDBLite consensus disorder prediction 187 339 - -
Vium6955g00024 927 FunFam Heterogeneous nuclear ribonucleoprotein Q 593 748 - -
Vium6955g00024 927 MobiDBLite consensus disorder prediction 121 140 - -
Vium6955g00024 927 MobiDBLite consensus disorder prediction 385 402 - -
Vium6955g00024 927 FunFam Heterogeneous nuclear ribonucleoprotein Q 375 502 - -
Vium6955g00024 927 Gene3D - 403 504 IPR012677 -
Vium6955g00024 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 606 686 IPR000504 GO:0003723
Vium6955g00024 927 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 294 927 - -
Vium6955g00024 927 SMART rrm1_1 509 586 IPR000504 GO:0003723
Vium6955g00024 927 SMART rrm1_1 429 502 IPR000504 GO:0003723
Vium6955g00024 927 SMART rrm1_1 607 680 IPR000504 GO:0003723
Vium6955g00024 927 CDD RRM_SF 608 682 - -
Vium6955g00024 927 CDD RRM_SF 510 573 - -
Vium6955g00024 927 SUPERFAMILY RNA-binding domain, RBD 597 690 IPR035979 GO:0003676
Vium6955g00024 927 MobiDBLite consensus disorder prediction 48 71 - -
Vium6955g00024 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 510 574 IPR000504 GO:0003723
Vium6955g00024 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 608 674 IPR000504 GO:0003723
Vium6955g00024 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 430 498 IPR000504 GO:0003723
Vium6955g00024 927 SUPERFAMILY RNA-binding domain, RBD 429 573 IPR035979 GO:0003676
Vium6955g00024 927 FunFam Heterogeneous nuclear ribonucleoprotein Q 508 592 - -
Vium6955g00024 927 Gene3D - 507 592 IPR012677 -
Vium6955g00024 927 MobiDBLite consensus disorder prediction 186 402 - -
Vium6955g00024 927 MobiDBLite consensus disorder prediction 77 110 - -
Vium6955g00024 927 MobiDBLite consensus disorder prediction 1 110 - -
Vium6955g00024 927 MobiDBLite consensus disorder prediction 714 740 - -
Vium6955g00024 927 CDD RRM_SF 430 499 - -
Vium6955g00024 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 428 506 IPR000504 GO:0003723
Vium6955g00024 927 Gene3D - 594 752 IPR012677 -
Vium6955g00024 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 508 593 IPR000504 GO:0003723
Vium6955g00024 927 MobiDBLite consensus disorder prediction 358 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6955g00024 Vium-Chr6955 155411 167379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6955g00024 429 674 Eukaryotic Initiation Factors Gene Family AT1G71770 25.097 1.90e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6955g00024 - - gmx:100819035 1270.37