Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6955g00023 ATGAGAACACGAAATGCTGATCCTGCTTCCAAATCAGCAACCCCCAAGAAGACGCCACCGCCGAGGAAATCCCCTGCGGCGAAGCGCACACCCGCCACCAAAACCAGAAGCACAAAGAAGAAAGAGGTCTCACCCGCACCCGATTCCAAAACCGATCAATCTACTGTGGAGCAGAAACCGGTAGCTAGTGGTAGCAGTACAAAAACTTCAAAAAGAAAGGCTCCAGGGAGACCTAGAGCTAAAGCAATTGATATTCCGAATTCGGAAGAACAACGTGAGGCAGTAGCTGATGAAACTCCTATTGAAGACAAAACCGAGGCTGCAGAGAAAGTGGAGGATGTTGCAGTTGTTGATGCAAATAGTATTGAGGTTGAGAAAGAGGGGGAACAAGATGTCGGGTTTTCTGAAGAGAAGGAACAGAAGTGGATGGAAGTGGATGAAGCTGTTGTTGAAAAGGGGAATGACATAATGGAAGTTGAAGTAACTGCTTCACAGGATGTTTCTGTTTCTTTTCAGCGACTACGGCGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGAGAAAGCAAAGGAAGTGTTCAAAGATCAAGAGGGGGACAAAGGAAAGGAGAAGTTGAAAGAACAGGAAGGAGATGGGGGGAAGGAAGAGGTGAAAGTGCATGAAGGGGACAAAGGAGAGGAAGAGTTGAAAGAACTGGAAGGAGACAAAGGAATGGAAGAGTTGAAAGAACTTGATGGGGAGAAAGAAAAGGAAGAGTTGAAAGAACATGAAGGAGAGAAAGGTAAGGAGGAATTGTTAGAACGGGAAGGAGAGCAAGGTAAAGAAGAGACGATAGAACAAGAAGGACATAAAGTAAAGGTTCAATTGAAAGAACAGGAAGTAGAAAAAGGGAAGTTGAAAGAGCAGGATCCAGCGAAAGCAGAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACACTGAGTCGCTTGGTGTAGAAGTGAAAGCCCAGGTGCAAACAGAAGATGCTAATCCCATTAAAGATGATGGTGAAGGACCCAAGAGTGGTAAAAAGTTAGATCTTCGAGGACAAGGGGAGGTGGAGCTTGCTGAAGAAGATCCGGAGGAAGATCCAGAAGAAGATCCAGAAGAACCTCTAGATGAAATTGGGACGTTGGAGGAGGAGCATAGGGAGTTGGAGGCCATAGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATTTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTCCAGAGGATGGGGGAGATACTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACGTGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTGAAGGACTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAGGGCTTGAGCCGGGGCTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTGTCTTTGGCCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATGCGTGAACCTGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTGAGGGAGCTATTTAAATCTTATGGTGAAATTGTAAGAATCGTCTTAGCACGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTTTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAAATGGGTGATGCGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAACCCTCTACCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGCAGCCTTTTCAAGACCAGTCCCTACTAGAGGGAGGGGGTTTGGACGAGGAAGGCAGCCCTTCAACAACAGGGGAAATTTCAACAGGGATAAGAGTTTCTATCACGGTGGACACAGTCAAATTGGAAGAATGGGATTTCGGGATGACGTTGATTTTAATATGCATACAGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCTGGTACCCGAGGTGCTCCATTTGCTGGACCGACTAGACCTTATCATGACAGAGCATGGTATGGTATGCCTGATGGAGGTCCCAGTGAGCCTATTCCTCCAAGGAGGACCTACTCCCCTGTTGGACAATTTGACATGCCTTTTATGGGAAGACATTTTGATGATCCTTATCTATATGATGACAATATGCATGGAATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGTTTGGATTATGCAGATCCTCCTATATTTCATGGAACTCGTCACCATGATTCTTTTGGGTCTGGCAGCGGACAGTACCCGCCTGACTACTATGCTTCCGATTACGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTAA 2748 0.4451 MRTRNADPASKSATPKKTPPPRKSPAAKRTPATKTRSTKKKEVSPAPDSKTDQSTVEQKPVASGSSTKTSKRKAPGRPRAKAIDIPNSEEQREAVADETPIEDKTEAAEKVEDVAVVDANSIEVEKEGEQDVGFSEEKEQKWMEVDEAVVEKGNDIMEVEVTASQDVSVSFQRLRRPIMDLNISADNEDCTGEKEGEKAKEVFKDQEGDKGKEKLKEQEGDGGKEEVKVHEGDKGEEELKELEGDKGMEELKELDGEKEKEELKEHEGEKGKEELLEREGEQGKEETIEQEGHKVKVQLKEQEVEKGKLKEQDPAKAEGEETNLFGHEENTESLGVEVKAQVQTEDANPIKDDGEGPKSGKKLDLRGQGEVELAEEDPEEDPEEDPEEPLDEIGTLEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRMGEILEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVVFGHAERTAKVAFAEPMREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFFTHEAAVACVDGVNKSEMGDAASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPVPTRGRGFGRGRQPFNNRGNFNRDKSFYHGGHSQIGRMGFRDDVDFNMHTDFRQRQFGPQGAVRGGHYAGTRGAPFAGPTRPYHDRAWYGMPDGGPSEPIPPRRTYSPVGQFDMPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTRHHDSFGSGSGQYPPDYYASDYGRGSYSSYYGGDGSHGHGYYY 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6955g00023 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 594 674 IPR000504 GO:0003723
Vium6955g00023 915 MobiDBLite consensus disorder prediction 186 390 - -
Vium6955g00023 915 MobiDBLite consensus disorder prediction 121 140 - -
Vium6955g00023 915 MobiDBLite consensus disorder prediction 702 728 - -
Vium6955g00023 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 418 486 IPR000504 GO:0003723
Vium6955g00023 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 498 562 IPR000504 GO:0003723
Vium6955g00023 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 596 662 IPR000504 GO:0003723
Vium6955g00023 915 SUPERFAMILY RNA-binding domain, RBD 417 561 IPR035979 GO:0003676
Vium6955g00023 915 SUPERFAMILY RNA-binding domain, RBD 584 678 IPR035979 GO:0003676
Vium6955g00023 915 CDD RRM_SF 418 487 - -
Vium6955g00023 915 Gene3D - 495 580 IPR012677 -
Vium6955g00023 915 Gene3D - 582 740 IPR012677 -
Vium6955g00023 915 MobiDBLite consensus disorder prediction 346 372 - -
Vium6955g00023 915 FunFam Heterogeneous nuclear ribonucleoprotein Q 496 580 - -
Vium6955g00023 915 MobiDBLite consensus disorder prediction 187 327 - -
Vium6955g00023 915 MobiDBLite consensus disorder prediction 48 71 - -
Vium6955g00023 915 Gene3D - 335 491 IPR012677 -
Vium6955g00023 915 FunFam Heterogeneous nuclear ribonucleoprotein Q 581 736 - -
Vium6955g00023 915 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 286 915 - -
Vium6955g00023 915 MobiDBLite consensus disorder prediction 373 390 - -
Vium6955g00023 915 MobiDBLite consensus disorder prediction 77 110 - -
Vium6955g00023 915 MobiDBLite consensus disorder prediction 1 110 - -
Vium6955g00023 915 FunFam Heterogeneous nuclear ribonucleoprotein Q 363 490 - -
Vium6955g00023 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 416 494 IPR000504 GO:0003723
Vium6955g00023 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 496 581 IPR000504 GO:0003723
Vium6955g00023 915 CDD RRM_SF 596 670 - -
Vium6955g00023 915 CDD RRM_SF 498 561 - -
Vium6955g00023 915 SMART rrm1_1 595 668 IPR000504 GO:0003723
Vium6955g00023 915 SMART rrm1_1 497 574 IPR000504 GO:0003723
Vium6955g00023 915 SMART rrm1_1 417 490 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6955g00023 Vium-Chr6955 155411 167379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6955g00023 417 662 Eukaryotic Initiation Factors Gene Family AT1G71770 25.097 1.90e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6955g00023 - - gmx:100784338 1306.2