Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6955g00022 ATGGAGTCGTGTGTCCCACCGGGGTTTCGCTTCCACCCAACAGATGAAGAACTTGTGGGTTATTATCTCAGGAAAAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAAATCGACCTATATCGCATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAGTGGTATTTCTTTAGTCATAAAGATAAAAAATATCCAACTGGGACAAGAACCAACAGAGCTACAATGGCAGGGTTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTTATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTCGAGAATGGACCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCATTCAGGAAAAGAACGAACGGTCAAACGAAGACTATCGAAGGGTGGGATCGAAGGTACACATACGAGGATCCTATCGACCTTATGTTAAGGAAACCACAGCGGAACAATATTTCGGCTGAAAATTTGTTGCACAAGAAAGAGACAAGGTTGATGCATGCAGAAGAAGCGATGCAGCTTCCTGAGCTAGAAAGTCCTTCCATGACAATAGTGAAAAAGCAAAGCTCGACATCAGTGTCCCTTATATCAGACAACATTAACAAGGAAGATGGTTCTGAGAAGGTGACCGATTGGAGGGCACTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGAGAGGCATGAAATAGAAGGGATGTCAAGCTTTGCAGGTCACAGTGGGTCGGACATGGCATTGTTGCTACTCCAGAATACTAATGAAAGGAACAAGTTCAACCCTTTTCTAAGTGCAGCTTCATCAGACTGTGACATCGGGATATGTGTATTTGAAAAATGA 948 0.4378 MESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCRAFRKRTNGQTKTIEGWDRRYTYEDPIDLMLRKPQRNNISAENLLHKKETRLMHAEEAMQLPELESPSMTIVKKQSSTSVSLISDNINKEDGSEKVTDWRALDKFVASQLSQEERHEIEGMSSFAGHSGSDMALLLLQNTNERNKFNPFLSAASSDCDIGICVFEK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6955g00022 315 Pfam No apical meristem (NAM) protein 6 133 IPR003441 GO:0003677|GO:0006355
Vium6955g00022 315 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Vium6955g00022 315 ProSiteProfiles NAC domain profile. 5 154 IPR003441 GO:0003677|GO:0006355
Vium6955g00022 315 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Vium6955g00022 315 FunFam NAC domain-containing protein 14 158 - -
Vium6955g00022 315 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6955g00022 Vium-Chr6955 145141 148137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6955g00022 1 314 NAC Transcription Factor Family AT2G18060 57.104 3.88e-139 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6955g00022 NAM 4.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6955g00022 - - gmx:100803726 486.878