Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6955g00021 ATGGAGTCGTGTGTCCCACCGGGGTTTCGCTTCCACCCAACAGATGAAGAACTTGTGGGTTATTATCTCAGGAAAAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAAATCGACCTATATCGCATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAGTGGTATTTCTTTAGTCATAAAGATAAAAAATATCCAACTGGGACAAGAACCAACAGAGCTACAATGGCAGGGTTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTTATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTCGAGAATGGACCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCATTCAGGAAAAGAACGAACGGTCAAACGAAGACTATCGAAGGGTGGGATCGAAGGTACACATACGAGGAACAAGCATGTGGTGTCTACTCTTGGGTGGATCCTATCGACCTTATGTTAAGGAAACCACAGCGGAACAATATTTCGGCTGAAAATTTGTTGCACAAGAAAGAGACAAGGTTGATGCATGCAGAAGAAGCGATGCAGCTTCCTGAGCTAGAAAGTCCTTCCATGACAATAGTGAAAAAGCAAAGCTCGACATCAGTGTCCCTTATATCAGACAACATTAACAAGGAAGATGGTTCTGAGAAGGTGACCGATTGGAGGGCACTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGAGAGGCATGAAATAGAAGGGATGTCAAGCTTTGCAGGTCACAGTGGGTCGGACATGGCATTGTTGCTACTCCAGAATACTAATGAAAGGAACAAGTTCAACCCTTTTCTAAGTGCAGCTTCATCAGACTGTGACATCGGGATATGTGTATTTGAAAAATGA 978 0.4397 MESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCRAFRKRTNGQTKTIEGWDRRYTYEEQACGVYSWVDPIDLMLRKPQRNNISAENLLHKKETRLMHAEEAMQLPELESPSMTIVKKQSSTSVSLISDNINKEDGSEKVTDWRALDKFVASQLSQEERHEIEGMSSFAGHSGSDMALLLLQNTNERNKFNPFLSAASSDCDIGICVFEK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6955g00021 325 Pfam No apical meristem (NAM) protein 6 133 IPR003441 GO:0003677|GO:0006355
Vium6955g00021 325 ProSiteProfiles NAC domain profile. 5 154 IPR003441 GO:0003677|GO:0006355
Vium6955g00021 325 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Vium6955g00021 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 236 - -
Vium6955g00021 325 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Vium6955g00021 325 FunFam NAC domain-containing protein 14 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6955g00021 Vium-Chr6955 144721 148137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6955g00021 1 324 NAC Transcription Factor Family AT2G18060 58.470 1.04e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6955g00021 NAM 4.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6955g00021 - - gmx:100803726 498.434