Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6955g00018 ATGGAAGATGGGGAAACTAAGGATGTTGGCATAGGTAACCAAACACTCACACCTTACTCTCTTCTTCCCTTCACTACCATGACTAAATTTATCATCCTGCTGTTATTGTGCGCACGCTTCTTATCATGCGCCCACTGCGCCTCTGTCACCGAGATCCAAGCCTTGACGTCGTTCAAGCTCAACCTTCACGACCCTCTCGGCGCGCTTAACGGCTGGGACCCATCAACACCGTTAGCTCCTTGCGACTGGCGCGGCGTTTCTTGCAAGAACGACCGAGTTACCGAGTTACGTCTGCCTCGCCTTCAACTCAGTGGCCTACTTGACGACCGCATTTCAGACCTACGCATGCTTCGAAGGCTGAGCCTTCGCTCTAACTCCTTCAACGGCACAATTCCCCCATCCCTCTCCAAATGCACGCTCCTACGCGCCTTGTTCCTACAGTATAACGACCTCTCCGGCCAACTCCCGCCGGAGATCGGAAACCTCGCCGCTCTCCAGATTCTCAACGTTGCCGGCAACAACCTCTCTGGTGAAATACCCGCCGAGCTTCCCCTCCATCTCAAGTACGTTGACCTCTCCGCCAACGCCTTCTCCGGCCTGATTCCGACCACCATCGCCGGTCTTTCCGAGCTTCGGCTTATCAACCTCTCCTACAACAAGTTCTCGGGCCAGATTCCTGCGCGCATTGGAGAGCTTCAGAATCTGCAATACCTTTGGCTCGATCACAATGTTCTCGGCGGAACCTTACCTTCGTCTCTAGCGAATTGTTCCTCGCTCGTGCATTTGAGCGTGGAAGGGAACGCCCTCGCCGGCGTGTTACCGGCTGCGATTGCGGCCCTCCCGAACCTCCAGGTGTTGTCGCTCGCGCAGAACAACTTCACCGGCGCCGTTCCGGCTTCCGTTTTCTGCAACGTGTCGCTCAAAGCGCCGTCACTTCGCATCGTTCAGTTAGGGTTTAACCGTTTCACGGATTTCGCGTGGCCTCAAGCCGCCACGTGTTTCAGTATTCTTAAGGTTTTGGATATTCAGCAAAATGGCGTGCGCGGCATGTTTCCGCTGTGGCTAACCAACGTGACGACGTTGTCGGTTCTCGACATTTCCGGTAACGCACTTTTCGGCGAGGTTCCGACGGAAATTGGAAATCTCTGGAAATTGGATGAGCTGAAGATGGCCAATAATTCGTTCTCAGGCGAGATTCCGCCGGCATTAGTAAAATGTAGGTCCCTTCGCGTTCTTGATTTTGAAGGAAACCGGTTTTCCTCTGAGGTTCCTTCGTTTATAGGAAATCTGACAGCGCTGAAGGTTCTATCTCTTGGTGTGAACCATTTCTCTGGTTCTGTTCCGGTGAGTTTTGGGGGGCTTGTTTCTCTTGAAACTATGAGTTTAAGAGGTAATAGATTGAATGGTTCAATGCCAGAGGAAGTGATGGGGTTGAAGAATTTGACAGTGTTGGACCTCAGTGGAAACCAGTTTTCGGGTCATGTTTCTGGTGAAATTGGGAATCTGAGTAAATTAATGGTTCTGAATCTGAGTGGTAATGGCTTCTATGGAGAGATTCCTTCTACTTTGGGGAATCTTTTCAGGCTCACAACACTTGATTTGAGCAAACAAAATCTCTCCGGTAAATTGCCATATGAAATTTCGGGGCTTCCCAGCTTGCAGGTCATTGCTCTTCAAGAGAACAAGTTGTCTGGGGTGATACCTGAAGGGTTTAGCAGTTTGACCAGTTTGAAATACGTGAACCTAAGCTCTAACGAGTTTTCTGGGTATGTTCCTAAGAGCTATGGCTTTCTCCGATCTTTGGCTGTTCTTTCATTGTCTAATAACCGCATCATGGGAGTGATTCCCCCGGAAATTGGAAACTGCCCTGACATTGAAATTCTCGAGCTTAGATCAAATTACTTCGGGGGTCCCATTCCCGCGGATCTCTCTGGCCTAGCTCATTTGAAAGTCCTTGATTTAGGTAAGAACAACTTAACTGGGGCTTTGCCTGAGGATATCTCCAAATGCTCAGAGTTAACCGTTGTGTTAGCAGATCACAACGAACTTTCGGGTGCTATACCAGGGTCATTGGCCAAGTTATCACACCTAACTGTCCTGGATCTCTCTGCCAACCAATTGAGTGGCGAAATCCCCAGTAATCTAAACACCATCCCCGGTTTGGTGTACTTCAATGTCTCAGGCAACAAATTAGAAGGTGAGATTCCACCAATGTTGGGTTCTAAATTCAACGACTCCTCTGTATTTGCAAGCAACCAGAACTTGTGCGGGAAGCCATTGGATAGAAAGTGCGAAGAGACAGACAATAGGGAGAGAAATAGGTCGATGGTGTTAATCGTTATCATCGCGGTTGGAGCTTGCTTATTGGCATTGTGTTGCTGCTTCTACATCTCCAGCCTTCTGAGATGGCGCAGAAGGATCAAAGCCGCAGTGTCAGGGGAGAAGAAAAAGAGTCCAAGAACAAGTTCGGGAACAAGTCAAGGTCGAAGCAGCACCGACACGAACGGACCAAAACTCGTTATGTTCAACGCCAAAATCACACTCGCCGAAACAATCGAAGCAACAAGGCAATTCGACGAAGAAAACGTGCTGAGCAGAACAAGACACGGTTTAGTATTCAAGGCCTGCTACAACGACGGAATGGTCCTTTCCATTCGCAAGCTCCCAGACGGGTCACTAGACGAAAACATGTTCAGAAAAGAAGCCGAGTCGTTAGGAAGAATCAGGCACCGAAACCTAACAGTTCTCAGAGGCTACTTTGCAGGCCCATCGGATGTTAGACTCTTGGTCTACGATTACATGCCCAATGGGAACCTCGCAACGTTGCTCCAAGAAGCATCACACCTAGATGGTCACGTTCTGAATTGGCCAATGCGACACCTCATTGCATTAGGAATAGCCCGTGGCATAGCGTTTCTACACCAATCCTCATTTATCCACGGTGACATCAAACCCCAAAACGTGCTCTTTGATGCAGACTTCGAAGCCCATTTATCAGATTTCGGGTTGGACAAGTTAACAGTTACCAACCCAGTCGAAGCCTCAACTTCAAGCACAGCTTCAGTTGGCACGTTGGGTTACGTGTCCCCGGAGGCTGTACTAACAGGGGAACCCACGAAAGAGTGTGACGTGTACAGCTTCGGCATCGTTTTGTTGGAACTTCTCACCGGGAAGAGACCGGTGATGTTCACGCAGGATGAGGATATAGTGAAGTGGGTGAAGAAACAGTTACAGAACGGTCAAATTGCGGAGCTACTAGAGCCTGGTTTGTTTGAACTTGACCCAGAGTCTTCGGAATGGGAAGAGTTCTTGCTGGGTGTGAAAGTTGGTCTGCTTTGCACAGCCCCAGACCCTCTTGATCGACCAACCATGGCTGACATCGTGTTCATGCTCGAAGGTTGTCGTGTTGGACCCGATATTCCATCCTCCGCTGAAACCACACAACCTTCTCCGGTGTAA 3459 0.4949 MEDGETKDVGIGNQTLTPYSLLPFTTMTKFIILLLLCARFLSCAHCASVTEIQALTSFKLNLHDPLGALNGWDPSTPLAPCDWRGVSCKNDRVTELRLPRLQLSGLLDDRISDLRMLRRLSLRSNSFNGTIPPSLSKCTLLRALFLQYNDLSGQLPPEIGNLAALQILNVAGNNLSGEIPAELPLHLKYVDLSANAFSGLIPTTIAGLSELRLINLSYNKFSGQIPARIGELQNLQYLWLDHNVLGGTLPSSLANCSSLVHLSVEGNALAGVLPAAIAALPNLQVLSLAQNNFTGAVPASVFCNVSLKAPSLRIVQLGFNRFTDFAWPQAATCFSILKVLDIQQNGVRGMFPLWLTNVTTLSVLDISGNALFGEVPTEIGNLWKLDELKMANNSFSGEIPPALVKCRSLRVLDFEGNRFSSEVPSFIGNLTALKVLSLGVNHFSGSVPVSFGGLVSLETMSLRGNRLNGSMPEEVMGLKNLTVLDLSGNQFSGHVSGEIGNLSKLMVLNLSGNGFYGEIPSTLGNLFRLTTLDLSKQNLSGKLPYEISGLPSLQVIALQENKLSGVIPEGFSSLTSLKYVNLSSNEFSGYVPKSYGFLRSLAVLSLSNNRIMGVIPPEIGNCPDIEILELRSNYFGGPIPADLSGLAHLKVLDLGKNNLTGALPEDISKCSELTVVLADHNELSGAIPGSLAKLSHLTVLDLSANQLSGEIPSNLNTIPGLVYFNVSGNKLEGEIPPMLGSKFNDSSVFASNQNLCGKPLDRKCEETDNRERNRSMVLIVIIAVGACLLALCCCFYISSLLRWRRRIKAAVSGEKKKSPRTSSGTSQGRSSTDTNGPKLVMFNAKITLAETIEATRQFDEENVLSRTRHGLVFKACYNDGMVLSIRKLPDGSLDENMFRKEAESLGRIRHRNLTVLRGYFAGPSDVRLLVYDYMPNGNLATLLQEASHLDGHVLNWPMRHLIALGIARGIAFLHQSSFIHGDIKPQNVLFDADFEAHLSDFGLDKLTVTNPVEASTSSTASVGTLGYVSPEAVLTGEPTKECDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQNGQIAELLEPGLFELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMADIVFMLEGCRVGPDIPSSAETTQPSPV 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6955g00018 1152 FunFam Putative LRR receptor-like serine/threonine-protein kinase 49 184 - -
Vium6955g00018 1152 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
Vium6955g00018 1152 Gene3D Ribonuclease Inhibitor 397 496 IPR032675 -
Vium6955g00018 1152 FunFam Uncharacterized protein 280 496 - -
Vium6955g00018 1152 SUPERFAMILY Protein kinase-like (PK-like) 840 1140 IPR011009 -
Vium6955g00018 1152 SMART serkin_6 858 1130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6955g00018 1152 MobiDBLite consensus disorder prediction 816 837 - -
Vium6955g00018 1152 SUPERFAMILY L domain-like 519 760 - -
Vium6955g00018 1152 SUPERFAMILY L domain-like 48 354 - -
Vium6955g00018 1152 Gene3D Ribonuclease Inhibitor 46 184 IPR032675 -
Vium6955g00018 1152 Gene3D Ribonuclease Inhibitor 185 396 IPR032675 -
Vium6955g00018 1152 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 934 1139 - -
Vium6955g00018 1152 SUPERFAMILY L domain-like 333 592 - -
Vium6955g00018 1152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 978 990 IPR008271 GO:0004672|GO:0006468
Vium6955g00018 1152 SMART LRR_sd22_2 232 255 - -
Vium6955g00018 1152 SMART LRR_sd22_2 646 669 - -
Vium6955g00018 1152 SMART LRR_sd22_2 280 307 - -
Vium6955g00018 1152 SMART LRR_sd22_2 478 504 - -
Vium6955g00018 1152 SMART LRR_sd22_2 694 717 - -
Vium6955g00018 1152 Pfam Leucine rich repeat 407 467 IPR001611 GO:0005515
Vium6955g00018 1152 Pfam Leucine rich repeat 551 611 IPR001611 GO:0005515
Vium6955g00018 1152 Pfam Leucine rich repeat 186 245 IPR001611 GO:0005515
Vium6955g00018 1152 Gene3D Ribonuclease Inhibitor 497 773 IPR032675 -
Vium6955g00018 1152 Pfam Leucine Rich Repeat 648 670 IPR001611 GO:0005515
Vium6955g00018 1152 Gene3D Phosphorylase Kinase; domain 1 821 933 - -
Vium6955g00018 1152 FunFam Inactive leucine-rich repeat receptor-like protein kinase 185 275 - -
Vium6955g00018 1152 ProSiteProfiles Protein kinase domain profile. 858 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6955g00018 1152 PANTHER OS05G0588300 PROTEIN 508 618 - -
Vium6955g00018 1152 SMART LRR_typ_2 478 501 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 574 597 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 430 453 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 598 622 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 550 573 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 454 477 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 162 186 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 114 138 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 502 526 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 232 256 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 280 304 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 646 670 IPR003591 -
Vium6955g00018 1152 SMART LRR_typ_2 694 718 IPR003591 -
Vium6955g00018 1152 MobiDBLite consensus disorder prediction 812 837 - -
Vium6955g00018 1152 Gene3D Transferase(Phosphotransferase) domain 1 934 1140 - -
Vium6955g00018 1152 FunFam Putative LRR receptor-like serine/threonine-protein kinase 821 933 - -
Vium6955g00018 1152 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 498 768 - -
Vium6955g00018 1152 Pfam Protein kinase domain 869 1127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6955g00018 1152 Pfam Leucine Rich repeat 694 710 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6955g00018 Vium-Chr6955 101717 105754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6955g00018 30 1152 Receptor kinase-like Gene Family AT4G36180 65.933 0.0 1436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vium6955g00018 Pkinase 7.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6955g00018 - - vun:114175753 2110.11