Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6955g00014 ATGCAAAACAACACACCTTCAAATTCAAAGCCTTCAACTTCAATTATGCGAACGCTCTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCCGATGAGGCTGCCCTATGCCGTGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGTGATGTGCCACGCTGCGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGCGATATGATAGTTCATGTTGGAGGTAAAAGGACACATGAGAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGAAAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAAGTGAGACTAAAAGAGGACAAAATGCACTGCCCAAAATAAAAATGGGAGAGAAACAGCAAAATCACAGGATGCCCCTGATTCTGACGCAAGAACCAAATGCTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAACATCAAATAATCAGGTTAGGATGCCTGGAAAGTAA 615 0.4472 MQNNTPSNSKPSTSIMRTLCDACESAAAIVFCAADEAALCRACDKKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGEKPGKSENPASQPLDPSETKRGQNALPKIKMGEKQQNHRMPLILTQEPNADEHAMMGTKMIDLNMKPQRIHEPTSNNQVRMPGK 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6955g00014 204 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Vium6955g00014 204 PANTHER B-BOX ZINC FINGER PROTEIN 22 16 158 - -
Vium6955g00014 204 CDD Bbox1_BBX-like 19 62 - -
Vium6955g00014 204 ProSiteProfiles Zinc finger B-box type profile. 66 111 IPR000315 GO:0008270
Vium6955g00014 204 FunFam B-box zinc finger protein 19 17 107 - -
Vium6955g00014 204 SMART bboxneu5 66 111 IPR000315 GO:0008270
Vium6955g00014 204 SMART bboxneu5 15 62 IPR000315 GO:0008270
Vium6955g00014 204 MobiDBLite consensus disorder prediction 185 204 - -
Vium6955g00014 204 MobiDBLite consensus disorder prediction 120 143 - -
Vium6955g00014 204 Gene3D Classic Zinc Finger 16 110 - -
Vium6955g00014 204 CDD Bbox1_BBX-like 71 111 - -
Vium6955g00014 204 SUPERFAMILY B-box zinc-binding domain 63 102 - -
Vium6955g00014 204 Pfam B-box zinc finger 18 57 IPR000315 GO:0008270
Vium6955g00014 204 Pfam B-box zinc finger 67 107 IPR000315 GO:0008270
Vium6955g00014 204 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6955g00014 Vium-Chr6955 73271 76688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6955g00014 16 198 C2C2-CO-like Transcription Factor Family AT4G38960 61.749 5.63e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vium6955g00014 zf-B_box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6955g00014 - - vun:114176173 405.986