Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6955g00001 ATGGATTTACTTATGCAACTGAAAACCGTAATCGAACCGTTCGGTACGACGGTCTTGTTCATAATTCCGGTGACGTTGGTGCTGTGGGGTTTACTGTCTCGAATTCGCAGAAAAACGGCGCCGTATCCCCCGGGGCCTAAAGGCCTTCCCATCATAGGCAACATGAACATGATGGACCAGCTCACACACAAAGGCCTGGCCAAACTCGCCAAGCAATACGGCGGCGTTTTTCACCTCCGCATAGGGTTCCTCCCCATGGTTGCCATTTCAAACGCGGAAGCGGCACGTGAAGTGCTCCAAGTCCAAGACAACATATTCTCCAACCGCCCCGCCACCATAGCCATCAGGTACCTAACCTACGACCGCGCCGACATGGCTTTCGCTCACTACGGTCCCTTCTGGCGCCAGATGCGCAAAATCTGCGTCATCAAACTCTTCAGCCGCAAGCGCGCCGAGTCCTGGAACTCCGTCAGAGACGAAGTCGACACCATCGTCCGCACCGTTGCGGCGAATGTGGGTAAACCCGTTAACGTTGGGGAACTGGTGTTCAACCTCACAAAAAATATCATCTACCGCGCCGCTTTCGGGTCCAGCTCCCGACAGGGACAAGACAAGTTCATTTCAATTCTTCAGGAGTTTTCCAAGTTGTTTGGGGCCTTCAATATTGCGGACTTTGTGCCTTGTCTCGGGTGGGTTGATCCTCAGGGCCTGAACTTGAGACTCGTCCAGGCACGCGCCGCCTTGGATAGCTTCATTGATAACATCATTGAGGAGCACGTGGAGAAGAAGAGGAGCGGCAAGTGTTGTGAGGAAGAAAGTGACATGGTTGATGAGTTGCTGAATTTTTACAGCCGACACCCCAATTTCAGTAATCAATCAAACGACTTGCAGAACTCCATCACACTCACCAAAGACAACATCAAAGCCATCATCATGGACGTGATGTTCGGAGGGACGGAAACGGTGGCATCAGGAATCGAGTGGACAATGGCGGAGCTAATGAGAAGCCCAGAAGACCTACGGCGCGTGCAGCAAGAACTAGCCGACGTAGTGGGCCTGGACCGGCGCATGGAGGAATCGGACCTCGAAAAGCTCATCTTTCTGAAATGCGCGGTGAAGGAGGTGCTTCGGATGCACCCGCCGATTCCGCTTCTCCTCCACGAGACGGCAGAGGAAGCGGTGGTTTGCGGGTACCACGTACCGAAGGGTTCGCGCGTGATGATAAACGCGTGGGCCATTGGAAGGGACGGGGACTCGTGGGAGGAACCGGAAGCGTTCAAGCCGTCGCGGTTTCTGAACCCGAATGCGCCGGATTTCAAAGGGAGCAACTTCGAGTTCATTCCGTTCGGGTCGGGTCGGAGATCCTGTCCCGGAATGCAACTGGGTCTTTACGCGCTGGAAATGGCCGTGGCGCACTTGCTTCACTGCTTCACGTGGGAGTTACCCGATGGGATGAAACCCAGCGAGTTGGACATGAGTGACGTGTTCGGACTCACCGCGCCCATGGGGAGTCGACTCGTGGCGATTCCATCGAAACGTGTGTTATGTCATGTATAA 1557 0.5446 MDLLMQLKTVIEPFGTTVLFIIPVTLVLWGLLSRIRRKTAPYPPGPKGLPIIGNMNMMDQLTHKGLAKLAKQYGGVFHLRIGFLPMVAISNAEAAREVLQVQDNIFSNRPATIAIRYLTYDRADMAFAHYGPFWRQMRKICVIKLFSRKRAESWNSVRDEVDTIVRTVAANVGKPVNVGELVFNLTKNIIYRAAFGSSSRQGQDKFISILQEFSKLFGAFNIADFVPCLGWVDPQGLNLRLVQARAALDSFIDNIIEEHVEKKRSGKCCEEESDMVDELLNFYSRHPNFSNQSNDLQNSITLTKDNIKAIIMDVMFGGTETVASGIEWTMAELMRSPEDLRRVQQELADVVGLDRRMEESDLEKLIFLKCAVKEVLRMHPPIPLLLHETAEEAVVCGYHVPKGSRVMINAWAIGRDGDSWEEPEAFKPSRFLNPNAPDFKGSNFEFIPFGSGRRSCPGMQLGLYALEMAVAHLLHCFTWELPDGMKPSELDMSDVFGLTAPMGSRLVAIPSKRVLCHV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6955g00001 518 PANTHER CYTOCHROME P450 84A1-RELATED 17 517 - -
Vium6955g00001 518 Gene3D Cytochrome P450 35 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 FunFam Cytochrome P450 84A1 35 512 - -
Vium6955g00001 518 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 CDD CYP71-like 72 502 - -
Vium6955g00001 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Vium6955g00001 518 SUPERFAMILY Cytochrome P450 43 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6955g00001 518 Pfam Cytochrome P450 43 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6955g00001 Vium-Chr6955 13508 16514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6955g00001 50 516 Monolignol Biosynthesis Gene Families AT4G36220 71.762 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6955g00001 K09755 - gmx:100807448 893.264