Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6951g00006 ATGTATAGCAATTTCAAGGAGCAGGCGATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCTGGGAACTACGCGAAAGCGTTTCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAATTCACCGAGTACCTGCGCCGGGCCGAAGAGATTCGAGCCGTCCTCGACGACGGAGGTCCAGGCCCGGCTTCTAACGGGGACGCCGCCGTAGCCGCCAGGCCCAAGACCAAGCCCAAGGATGGTGAAGGTGGTGGCGATGGGGAGGACCCCGAGCAAGCCAAGCTTAGGGCTGGCCTCAACTCGGCCATCGTGAGGGAGAAGCCCAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCAAAGCAGGCCTTGCAGGAGGCTGTGATTTTACCTGTGAAGTTCCCTCAGTTCTTTACTGGGAAACGACGTCCCTGGAGAGCCTTTTTGTTGTATGGACCTCCTGGAACGGGAAAATCTTATTTAGCGAAGGCAGTTGCAACAGAAGCTGAGTCCACATTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCGAAATGGCTCGAGAAAGTGCCCCATCCATCATATTCATTGATGAAATAGATTCCCTATGTGGTCAGCGTGGGGAAGGCAATGAGAGCGAAGCTTCAAGACGAATTAAAACAGAGCTTCTGGTTCAGATGCAGGGTGTAGGGCACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCCTATGCCTTAGACCAGGCAATAAGGCGAAGATTTGATAAGCGCATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTGGGAGATACTCCTAATAACTTGACTGAAAGTGATTTTGAGTACTTGGCGAGCAGGACAGAGGGGTTTTCTGGTTCAGATATCTCTGTCTGTGTAAAAGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCTATGTTCTTCTTTAAAAATCCCGAGGGTATGTGGATCCCGTGTGGACCAAAGCAACAGGGTTCTGTACAAACCACAATGCAGGATCTTGCTACAAAAGGACTTGCTTCTAAGATCCTTCCACCTCCTATTACGAGGACAGATTTTGAGAAGGTACTCGCGAGACAAAGGCCTACAGTAAGCAAATCCGACCTTGATGTTCACGAGAGATTCACGAAGGAGTTTGGAGAGGAAGGTTAA 1305 0.4874 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGEGGGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGSVQTTMQDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLDVHERFTKEFGEEG 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6951g00006 434 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Vium6951g00006 434 Pfam Vps4 C terminal oligomerisation domain 367 431 IPR015415 -
Vium6951g00006 434 CDD RecA-like_VPS4 125 295 - -
Vium6951g00006 434 Gene3D - 299 414 - -
Vium6951g00006 434 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Vium6951g00006 434 Gene3D - 6 75 - -
Vium6951g00006 434 Gene3D - 126 422 IPR027417 -
Vium6951g00006 434 SMART AAA_5 163 299 IPR003593 GO:0016887
Vium6951g00006 434 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Vium6951g00006 434 SMART smart 2 79 IPR007330 -
Vium6951g00006 434 MobiDBLite consensus disorder prediction 73 110 - -
Vium6951g00006 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 430 IPR027417 -
Vium6951g00006 434 MobiDBLite consensus disorder prediction 91 110 - -
Vium6951g00006 434 FunFam vacuolar protein sorting-associated protein 4A 299 414 - -
Vium6951g00006 434 CDD MIT_VPS4 4 77 IPR045253 -
Vium6951g00006 434 FunFam Vacuolar protein sorting-associated protein 4 126 306 - -
Vium6951g00006 434 PANTHER AAA DOMAIN-CONTAINING 16 432 - -
Vium6951g00006 434 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Vium6951g00006 434 SUPERFAMILY MIT domain 2 81 IPR036181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6951g00006 Vium-Chr6951 49384 56274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6951g00006 162 355 Calmodulin-binding Proteins AT3G56690 36.735 3.60e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6951g00006 K12196 - gmx:100788150 835.099