Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6951g00005 ATGTATAGCAATTTCAAGGAGCAGGCGATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCTGGGAACTACGCGAAAGCGTTTCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAATTCACCGAGTACCTGCGCCGGGCCGAAGAGATTCGAGCCGTCCTCGACGACGGAGGTCCAGGCCCGGCTTCTAACGGGGACGCCGCCGTAGCCGCCAGGCCCAAGACCAAGCCCAAGGATGGTGAAGGTGGTGGCGATGGGGAGGACCCCGAGCAAGCCAAGCTTAGGGCTGGCCTCAACTCGGCCATCGTGAGGGAGAAGCCCAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCAAAGCAGGCCTTGCAGGAGGCTGTGATTTTACCTGTGAAGTTCCCTCAGTTCTTTACTGGGAAACGACGTCCCTGGAGAGCCTTTTTGTTGTATGGACCTCCTGGAACGGGAAAATCTTATTTAGCGAAGGCAGTTGCAACAGAAGCTGAGTCCACATTTTTCAGGTAA 585 0.5504 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGEGGGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6951g00005 194 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Vium6951g00005 194 SMART smart 2 79 IPR007330 -
Vium6951g00005 194 MobiDBLite consensus disorder prediction 73 110 - -
Vium6951g00005 194 FunFam MIT domain protein 126 160 - -
Vium6951g00005 194 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Vium6951g00005 194 Gene3D - 6 75 - -
Vium6951g00005 194 Gene3D - 126 193 IPR027417 -
Vium6951g00005 194 Pfam ATPase family associated with various cellular activities (AAA) 168 193 IPR003959 GO:0005524|GO:0016887
Vium6951g00005 194 MobiDBLite consensus disorder prediction 91 110 - -
Vium6951g00005 194 SUPERFAMILY MIT domain 2 81 IPR036181 -
Vium6951g00005 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 193 IPR027417 -
Vium6951g00005 194 CDD MIT_VPS4 4 77 IPR045253 -
Vium6951g00005 194 PANTHER AAA DOMAIN-CONTAINING 15 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6951g00005 Vium-Chr6951 49376 53188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6951g00005 106 193 Calmodulin-binding Proteins AT3G56690 40.860 1.31e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6951g00005 K12196 - gmx:100788150 368.237