Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6951g00003 ATGGCGGAAGAACACCGATGCCAGGCACCACGCTTGTGCGTCAACAATTGCGGTTTCTTTGGCAGCCCTGCCACGCAGAATCTGTGCTCGAAGTGTTACCGCGATTTGCAGCTCAATGAGCAGCAATCTTCTAACGCGAAGATGGTTCTGAATCAGTCTCTTGTTCTTCCGGCGCCTCCGGCGCCGGTTTCTGAACCGTCTTCTTCGAAGTCGGCGGATCCGGCTTCTGCTGTGGTTGAGGAAGTGCCACGCGCGACGGAAGAGGCTAAGGCGCCGCTGCAGAACCGCTGTATGACGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCCGGTGCGGGATGATGCTTTGCGGGACGCACCGTTACCCTGAGCAGCACGCGTGCGAGTTCGACTTCAAGGGGATGGGGAGGGACCAGATCGCGAAGGCGAATCCGGTGGTGAAGGGCGAGAAGCTCGAGAAGATCTGA 471 0.5945 MAEEHRCQAPRLCVNNCGFFGSPATQNLCSKCYRDLQLNEQQSSNAKMVLNQSLVLPAPPAPVSEPSSSKSADPASAVVEEVPRATEEAKAPLQNRCMTCRRRVGLTGFKCRCGMMLCGTHRYPEQHACEFDFKGMGRDQIAKANPVVKGEKLEKI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6951g00003 156 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Vium6951g00003 156 ProSiteProfiles Zinc finger AN1-type profile. 91 137 IPR000058 GO:0008270
Vium6951g00003 156 MobiDBLite consensus disorder prediction 57 85 - -
Vium6951g00003 156 SMART AN1_Zf_4 97 134 IPR000058 GO:0008270
Vium6951g00003 156 FunFam Zinc finger AN1-type containing 6 68 152 - -
Vium6951g00003 156 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 156 - -
Vium6951g00003 156 SUPERFAMILY AN1-like Zinc finger 83 151 IPR035896 -
Vium6951g00003 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
Vium6951g00003 156 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Vium6951g00003 156 Gene3D - 1 55 - -
Vium6951g00003 156 Gene3D - 66 152 IPR035896 -
Vium6951g00003 156 Pfam AN1-like Zinc finger 97 133 IPR000058 GO:0008270
Vium6951g00003 156 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6951g00003 Vium-Chr6951 32920 34397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6951g00003 1 156 C2H2 Transcription Factor Family AT3G52800 50.877 2.78e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6951g00003 - - gmx:100807363 261.151