Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6951g00002 ATGAGTTTTAGGGAGTGCAATGTAGAAAACGAGAATCTGTGTCTTCAAACCCCAACTTTCATCGAGTGGCTCAAACCATCTTCTTCTTCTGTAATAAGTTCAATATCATCACCACCTTCTTCCTTGGCTCAGCATGATCAACTTTCCCAAGAAACGATCCAGTTTTTGCCCTTCAAGGAAGACCATGAAAAAGATGGTTTAGAAGTGAAAGAAGAGAAGGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTCACACAGTAGACCCTGACACTGATAATCATGAAAAGAAGATTATCCATGTAAAGGAAGAAGAACCCTTGAAGAAAAGCTTCCAGGGTTGTTCTTTTAACCAGGAGAGAAGATTTTGGATACCAACTCCTGCACAGATCCTTGTCGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGATCCGAATTTAGAAAAGGACCAGACTCGCTTAGAGGAACACAACCAGCAGCAATGCTAAGGCTGCCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCCAAGCCCTTGAAGGACTTCAGAACTCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTATGTGCCGAAAGTGTTCAAAATCCTTTGCAGTTAAAGGAGACTGGAGGACTCACGAAAAGAACTGCGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCCCTAAAAGACCATATTAGATCCTTTGGAAAAGGCCACTCCCCACATCCTTCCCATGAAGGCTTCGTTGAGGATGAGAAAGAATGCTTTACTGGATCTGATGAAGATGAAGTTGCTCATACATGA 909 0.4301 MSFRECNVENENLCLQTPTFIEWLKPSSSSVISSISSPPSSLAQHDQLSQETIQFLPFKEDHEKDGLEVKEEKVEQVTVALHIGLPHTVDPDTDNHEKKIIHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEGFVEDEKECFTGSDEDEVAHT 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6951g00002 302 SUPERFAMILY beta-beta-alpha zinc fingers 209 243 IPR036236 -
Vium6951g00002 302 FunFam Zinc finger protein WIP2 192 274 - -
Vium6951g00002 302 SMART c2h2final6 186 218 IPR013087 -
Vium6951g00002 302 SMART c2h2final6 223 243 IPR013087 -
Vium6951g00002 302 SMART c2h2final6 139 161 IPR013087 -
Vium6951g00002 302 Pfam Zinc finger, C2H2 type 139 158 IPR013087 -
Vium6951g00002 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Vium6951g00002 302 Gene3D Classic Zinc Finger 138 161 - -
Vium6951g00002 302 Gene3D Classic Zinc Finger 181 271 - -
Vium6951g00002 302 SUPERFAMILY beta-beta-alpha zinc fingers 108 162 IPR036236 -
Vium6951g00002 302 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Vium6951g00002 302 PANTHER ZINC FINGER PROTEIN WIP2 28 288 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6951g00002 Vium-Chr6951 21780 25348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6951g00002 7 292 C2H2 Transcription Factor Family AT1G08290 56.119 8.97e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6951g00002 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6951g00002 - - gmx:100819306 539.65