Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium694g00004 ATGGTGATAGGTCTTGGGTTGAAGATGAAGAGTGAGCAAGCAGGGAGCAATGGAAAGAACACTTTCATTCAGGCACATAGGGCATGGCTTCCCAAGCTTTTGATGTTGTGGATCCTTCTCATGGCTCTAATTGGTTGGTGCATCTATACTAAAATGGATGCTGACACTAAAGTCAGAAGAAAAGAGGTGCTCGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACACCTTCTGCAATTGACCAGGAAACCTTTGCAGATTATACAGCCAGGACAGCATTTGAAAGACCATTGCTCAGTGGAGTGGCCTATGCACAAAGAGTGGTTAACTCCGAGAGAGAATCATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAAAGCCTTCTCAGGTTAGAGATGAGTATGCACCGGTGATATTTGCACAAGAAACTCTTTCTTACCTCGAATCTCTTGATATGATGTCCGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTCACTAGCCCTTTTAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTATAAATCTAAGCTCCCTACAAAGCCAACAATGGAAGAGCGTATTAAAGCAACAGCTGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAACGTATATGACATCACAAACTTTACTGATCCCTTAATCATGTATGGGAAGCAAGATGAAGAAGGTGACATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATAAAATGATATGTAGGTATCACCAGAAGGCACCGACAAACTGGATAGCACTTACCACGGCATTCTTATTTTTTGTGATTCTTTTATTAGTGGGTTATATTTTGTATAGTGCTGGAAATCGTATTGTCAAAGTAGAGGATGATTTTCATAAAATGGCAGAATTAAAAGTCCGTGCAGAATCAGCTGATATTGCGAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATCAGAACACCCATGAATGGCATTTTAGGAATGCTCGGTCTGCTTCTAGGCACAGAATTGAGTTCCACTCAACTAGATTATGCTCAGACTGCTCAAGCATGTGGGATGGCTCTGATAGCATTGATAAATGAGGTGCTTGACCGTGCCAAAATTGAAGCTGGCAAGTTAGAGCTGGAAACAGTTCCATTTGACATTCGATCCATACTTGATGATGTGCTTTCTCTTTTCTCCGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCAGTATTTGTTTCTGATAAAGTTCCAGATATTGTCATGGGAGATCCTGGAAGATTCAGACAAATAGTAACAAACCTTGTTGGCAATTCAGTTAAATTCACTGAGCGAGGACATATATTGGTGAAAGTCCATCTAGCTGAAAATAGGATGTCCACAATGAATGGAAAAATGGAGACTTTTCTCAATGGACGATCAGATGAAGTTGTGCATGTGTCTAGCGGTGGTTATAATTTCAAAACTTTAAGCGGACATGAAGCAGCTGATGAACGGAACAGCTGGGACAATTTTAAGCATCTGATTGCCGACGAAGAATTTTTCTTTGATGATTCAGTTAAAAAGGTGGCAAGTGAATCCTATGAGCAAGTCACCTTGATGGTGAGTGTGGAGGACACTGGGAATGGAATTCCTTTCATAGCTCAAGATAAGATTTTCATGCCATTTGTACAGGCAGACAGCTCAACCTCAAGACATTATGGTGGTACTGGGATTGGCTTGAGTATAAGCAAGTGCCTGGTTGAACTGATGGGTGGTGAGATCAGTTTTATAAGCCGACCCCAGGTTGGGAGCACGTTTTCATTTACTGCAGATTTTGGAACAATCAAGAAAAATTCAATAACTGACATGAAGAAACATAACTTGGAAGATCTGCGTTCCAGTTTTAGAGGGTTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTTACTAGATACCATCTGAAGAGACTAGGGATTCAGGCCAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATTGGTCTTTGACCTCAGGAATATTTCAGCCTGATATGATTTTTGTTGAGAAAGACTCGTGGATTTGTGGAGAGGATGGGATCTTCAACGTGTGGCAGCTGGACTGGAAACAGAACGGGCACATGTTTAAGATACCTCAAATGATCCTTCTTGCAACCAACATTACTAATGCTGAATTTGATAAAGCTAAAGCAGCAGGTTTCAGTGATACTGTGATCATGAAGCCTCTGAGAGCCAGCATGGTGGCTGCATGTCTTCAACAAGTTCTGGGAACGGGGAAGAAGAGACAGCTAGGAAAGGACACTGGTTCATCTTTTGCACGAAGCCTTCTTTGTGGGAAAAAAATACTTGTGGTTGATGACAATAGGGTAAATAGAAGGGTCGCAGCAGGTGCATTACAAAATTTTGGAGCTCATGCAACGTGTGCAGAAAGTGGCAAAATTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTCAAGCAACTGGGAAAATTCGGGAAATGGAGAGAAAGGCAAATGAGCTTCTGATGAATGGTGAATGTGGTGAAGGAAATGGCTGGAAAAAGGAGTACCATTTACCTATATTGGCCATGACAGCAGATGTAATTCAAGCAACGTACGAGAAGTGTGTGGAATGTGGAATGGATGGTTACGTTACAAAGCCTTTTGAGGATGAAAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCCAAGCCTACCTCAGACAACTCATTACAGAATGGCAACAGAACTGGGAAAGCACCTNTTCCATTTGACATTCGATCCATACTTGATGATGTGCTTTCTCTTTTCTCCGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCAGTATTTGTTTCTGATAAAGTTCCAGATATTGTCATGGGAGATCCTGGAAGATTCAGACAAATAGTAACAAACCTTGTTGGCAATTCAGTTAAATTCACTGAGCGAGGACATATATTGGTGAAAGTCCATCTAGCTGAAAATAGGATGTCCACAATGAATGGAAAAATGGAGACTTTTCTCAATGGACGATCAGATGAAGTTGTGCATGTGTCTAGCGGTGGTTATAATTTCAAAACTTTAAGCGGACATGAAGCAGCTGATGAACGGAACAGCTGGGACAATTTTAAGCATCTGATTGCCGACGAAGAATTTTTCTTTGATGATTCAGTTAAAAAGGTGGCAAGTGAATCCTATGAGCAAGTCACCTTGATGGTGAGTGTGGAGGACACTGGGAATGGAATTCCTTTCATAGCTCAAGATAAGATTTTCATGCCATTTGTACAGGCAGACAGCTCAACCTCAAGACATTATGGTGGTACTGGGATTGGCTTGAGTATAAGCAAGTGCCTGGTTGAACTGATGGGTGGTGAGATCAGTTTTATAAGCCGACCCCAGGTTGGGAGCACGTTTTCATTTACTGCAGATTTTGGAACAATTAAGAAAAATTCAATAACTGACATGAAGAAACATAACTTGGAAGATCTGCGTTCCAGTTTTAGAGGGTTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTTACTAGATACCATCTGAAGAGACTAGGGATTCAGGCCAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATTGGTCTTTGACCTCAGGAATATTTCAGCCTGATATGATTTTTGTTGAGAAAGACTCGTGGATTTGTGGAGAGGATGGGATCTTCAACGTGTGGCAGCTGGACTGGAAACAGAACGGGCACATGTTTAAGATACCTCAAATGATCCTTCTTGCAACCAACATTACTAATGCTGAATTTGATAAAGCTAAAGCAGCAGGTTTCAGTGATACTGTGATCATGAAGCCTCTGAGAGCCAGCATGGTGGCTGCATGTCTTCAACAAGTTCTGGGAACGGGGAAGAAGAGACAGCTAGGAAAGGACACTGGTTCATCTTTTGCACGAAGCCTTCTTTGTGGGAAAAAAATACTTGTGGTTGATGACAATAGGGTAAATAGAAGGGTCGCAGCAGGTGCATTACAAAATTTTGGAGCTCATGCAACGTGTGCAGAAAGTGGCAAAATTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTCAAGCAACTGGGAAAATTCGGGAAATGGAGAGAAAGGCAAATGAGCTTCTGATGAATGGTGAATGTGGTGAAGGAAATGGCTGGAAAAAGGAGTACCATTTACCTATATTGGCCATGACAGCAGATGTAATTCAAGCAACGTACGAGAAGTGTGTGGAATGTGGAATGGATGGTTACGTTACAAAGCCTTTTGAGGAGGAAAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCCAAGCCTACCTCAGACAACTCATTACAGAATGGCAACAGAACTGGGAAAGCACCTTAA 4710 0.4178 MVIGLGLKMKSEQAGSNGKNTFIQAHRAWLPKLLMLWILLMALIGWCIYTKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFADYTARTAFERPLLSGVAYAQRVVNSERESFEKQHGWVIKTMERKPSQVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRARATGKAVLTSPFKLLGSHHLGVVLTFPVYKSKLPTKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNFTDPLIMYGKQDEEGDMSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYSAGNRIVKVEDDFHKMAELKVRAESADIAKSQFLATVSHEIRTPMNGILGMLGLLLGTELSSTQLDYAQTAQACGMALIALINEVLDRAKIEAGKLELETVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHILVKVHLAENRMSTMNGKMETFLNGRSDEVVHVSSGGYNFKTLSGHEAADERNSWDNFKHLIADEEFFFDDSVKKVASESYEQVTLMVSVEDTGNGIPFIAQDKIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISRPQVGSTFSFTADFGTIKKNSITDMKKHNLEDLRSSFRGFKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNWSLTSGIFQPDMIFVEKDSWICGEDGIFNVWQLDWKQNGHMFKIPQMILLATNITNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDTGSSFARSLLCGKKILVVDDNRVNRRVAAGALQNFGAHATCAESGKIALEMLQLPHNFDACFMDIQMPEMDGFQATGKIREMERKANELLMNGECGEGNGWKKEYHLPILAMTADVIQATYEKCVECGMDGYVTKPFEDENLYQAVAKFFNPKPTSDNSLQNGNRTGKAPXPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHILVKVHLAENRMSTMNGKMETFLNGRSDEVVHVSSGGYNFKTLSGHEAADERNSWDNFKHLIADEEFFFDDSVKKVASESYEQVTLMVSVEDTGNGIPFIAQDKIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISRPQVGSTFSFTADFGTIKKNSITDMKKHNLEDLRSSFRGFKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNWSLTSGIFQPDMIFVEKDSWICGEDGIFNVWQLDWKQNGHMFKIPQMILLATNITNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDTGSSFARSLLCGKKILVVDDNRVNRRVAAGALQNFGAHATCAESGKIALEMLQLPHNFDACFMDIQMPEMDGFQATGKIREMERKANELLMNGECGEGNGWKKEYHLPILAMTADVIQATYEKCVECGMDGYVTKPFEEENLYQAVAKFFNPKPTSDNSLQNGNRTGKAP 1569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium694g00004 1569 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1001 1228 IPR036890 -
Vium694g00004 1569 Gene3D - 52 104 - -
Vium694g00004 1569 CDD HATPase_EvgS-ArcB-TorS-like 491 669 - -
Vium694g00004 1569 SMART CHASE_2 101 286 IPR006189 -
Vium694g00004 1569 Gene3D - 346 437 - -
Vium694g00004 1569 Pfam CHASE domain 104 284 IPR006189 -
Vium694g00004 1569 CDD HATPase_EvgS-ArcB-TorS-like 1053 1231 - -
Vium694g00004 1569 Gene3D - 1005 1236 IPR036890 -
Vium694g00004 1569 SMART REC_2 850 983 IPR001789 GO:0000160
Vium694g00004 1569 SMART REC_2 1412 1545 IPR001789 GO:0000160
Vium694g00004 1569 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 669 IPR003594 -
Vium694g00004 1569 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1048 1231 IPR003594 -
Vium694g00004 1569 ProSiteProfiles Histidine kinase domain profile. 381 671 IPR005467 -
Vium694g00004 1569 FunFam Histidine kinase 4 346 437 - -
Vium694g00004 1569 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 428 666 IPR036890 -
Vium694g00004 1569 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 362 440 IPR036097 GO:0000155|GO:0007165
Vium694g00004 1569 SUPERFAMILY CheY-like 849 988 IPR011006 -
Vium694g00004 1569 ProSiteProfiles Response regulatory domain profile. 1413 1549 IPR001789 GO:0000160
Vium694g00004 1569 CDD REC_hyHK_CKI1_RcsC-like 852 983 - -
Vium694g00004 1569 ProSiteProfiles Response regulatory domain profile. 851 987 IPR001789 GO:0000160
Vium694g00004 1569 CDD HisKA 374 435 IPR003661 GO:0000155|GO:0007165
Vium694g00004 1569 Coils Coil 424 444 - -
Vium694g00004 1569 ProSiteProfiles CHASE domain profile. 101 313 IPR006189 -
Vium694g00004 1569 Pfam Response regulator receiver domain 1414 1484 IPR001789 GO:0000160
Vium694g00004 1569 Pfam Response regulator receiver domain 852 922 IPR001789 GO:0000160
Vium694g00004 1569 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 984 - -
Vium694g00004 1569 FunFam Histidine kinase 4 105 320 - -
Vium694g00004 1569 SUPERFAMILY CheY-like 1254 1389 IPR011006 -
Vium694g00004 1569 SMART HKATPase_4 1048 1233 IPR003594 -
Vium694g00004 1569 SMART HKATPase_4 486 671 IPR003594 -
Vium694g00004 1569 SUPERFAMILY CheY-like 692 827 IPR011006 -
Vium694g00004 1569 Gene3D - 1407 1555 - -
Vium694g00004 1569 Gene3D - 1251 1392 - -
Vium694g00004 1569 Gene3D - 845 993 - -
Vium694g00004 1569 Gene3D - 689 830 - -
Vium694g00004 1569 Gene3D - 438 674 IPR036890 -
Vium694g00004 1569 ProSiteProfiles Histidine kinase domain profile. 1009 1233 IPR005467 -
Vium694g00004 1569 Pfam His Kinase A (phospho-acceptor) domain 374 439 IPR003661 GO:0000155|GO:0007165
Vium694g00004 1569 SMART HisKA_10 374 439 IPR003661 GO:0000155|GO:0007165
Vium694g00004 1569 CDD REC_hyHK_CKI1_RcsC-like 1414 1545 - -
Vium694g00004 1569 SUPERFAMILY CheY-like 1411 1550 IPR011006 -
Vium694g00004 1569 Gene3D CHASE domain 105 320 IPR042240 -
Vium694g00004 1569 ProSiteProfiles Response regulatory domain profile. 1258 1388 IPR001789 GO:0000160
Vium694g00004 1569 ProSiteProfiles Response regulatory domain profile. 696 826 IPR001789 GO:0000160
Vium694g00004 1569 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Vium694g00004 1569 PRINTS Bacterial sensor protein C-terminal signature 614 624 IPR004358 GO:0016310|GO:0016772
Vium694g00004 1569 PRINTS Bacterial sensor protein C-terminal signature 655 668 IPR004358 GO:0016310|GO:0016772
Vium694g00004 1569 PRINTS Bacterial sensor protein C-terminal signature 631 649 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium694g00004 Vium-Chr694 33252 49281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium694g00004 15 996 Histidine Kinase Gene Family AT2G01830 69.355 0.0 1358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium694g00004 HATPase_c 3e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium694g00004 K14489 - gmx:100818481 1733.38