Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium694g00002 ATGAGGAGGCATGAACTGGGTTTTGGAGGTCTCTTCTTTTATGATCTTCTTTTTGTTCTCTCTTTCTTTGTTATCTCGATTAGATGTCAAGATGCAAACGTAATGGGAATTTTAAAGATCACCATCAATGCCCCTCTTAGCTTCGAATGGGTGGGTCAGGATATATGCAAATGGAAACATGTTGTGTGTGATTCATCAAAACGTGTGAAAGCTATTCAGATTGGGAATCAAAACCTCCAAGGGACTCTCCCCAAAGAGCTTGCGATGTTAACGGCATTGACCCGGTTTGAGTGTCAAGACAATAATCTTACAGGGGCATTCCCTTACCTCTCAAAATCCTTGCAGAGGTTGGTAATCCATGACAACAACTTCAACTTATTTCCCAGTGATTTCTTTAAGGGCATGAGCAGATTGCAAGAGGTGACAATTGACAACAACCCCTTCTCTCAATGGAACATTCCTAGCAGTCTCAAGGACTGTGTCGCACTCCAAACTTTTAGTGCTCAGAGGGCTGGCCTTGCTGGGACAATCCCAGATTTTTTTGGCAGAGATGGTCCCTTTGCAGGTTTGGTTTTCTTAGCTTTGTCTGATAATTTTTTAGAAGGTGGATTGCCTGCAAGCCTTTCAGGCAGTTCAATAGAGAATCTTTTGGTGAATGGACAAAACGGCAACTCTAAACTCAATGGCACCCTGGCTGTGTTAAGCAAAATGAAATCTTTGAAGCAAATATGGGCTAATGGGAATTCCTTCACTGGTCCTATACCAGATTTGTCACACCATGATCAACTTTATGATGTTAACTTGAGGGATAATCAATTGACTGGTGTTGTTCCACCCTCTTTAGTTGCTTTACCAAGTTTGAAGTTTGTGAACTTAACAAATAACCTTCTTCAAGGATCCCCTCCTAGGTTCAAAGATGGTGTAGCAGTCGACAACAACATGGATAAGGGGAGAAATCAGTATTGCACAAACGTGGTGGAGCAATCATGTAGTCCCCTTGTAAATGTTTTACTATCTATTGTTCAACCTTTGGGGTATCCTTTAAATTTTGCTCAAAGTTGGCAAGGTAATGATCCGTGTGCAAATAGATGGACAGGTGTGATCTGTTCTGGGGGGAATGTTTCGGTTATCAACTTTCAAAACATGGGTTTGTCTGGCACTATCTGTCCATGTTTTGCTGGTCTTACTTCGGTGACAAAAATATTTTTTGCTAACAATAATATCACGGGTACTATACCAAATGAACTTGCTAGTTTGCCTAATTTACAAGAGTTAGATGTTTCCAACAATGATATATACGGCAAAGTGCCATCATTTCGTGAAGGTGTGGATGTTAAATATGAAGGGAATCCTGACATTGGAAAGAATGAACAAACTAATTCAGGTCATGTAGGTCACGTAAAAAACAATAATACTGCAATAATTGTTGGAGTTACGGTAATGGTTGTTGTTTTACTTGTTGCTGGGGTTTTGATACTTGTTAAGTTTAGAAGAAAGGCAAAGTACGAGGGTAAGCTTCAACAGCAAAGCACAATTGTGATACCTCCTCGTTATGGGGATGGAAATGTTGCAATGATAAACAGTGGAAATATCAGTTCATTGTTAAGTCCTTCACAAAGTGTTTATAAAGGAGAAGCAAGTAACATGTTAATTCCAATTCAAATTTTGAGAGAAGCAACTAACAACTTTAGTGAGGGAAACATTTTGGGAAAAGGGGGATTTGGCACTGTATACAAAGGGGAATTGCATGATGGGACAAAGATTGCAGTGAAAAGGATGCAATCAACAGGATTTGTAGATCAAAAAGGGCAGAGTGAGTTCACGTCTGAAATTGCTGTGCTCACCAAGGTTCGACACAGAAATTTGGTTGCACTCTTGGGGTTTTGCTTAGATGGTAGTGAAAGACTTCTTGTGTATGAATGCATGCCTCAAGGTGCTCTTAGTAGACATTTGATAAACTGGAAAGAAGAGGGGCTAAAACCACTTGAATGGAAGACAAGACTTAGTATTGCATTGGATGTTGCTAGAGGTGTTGAATATCTCCATGGTTTGGCACAGCAGATTTTTATTCACAGAGATCTTAAACCATCCAACATTTTGCTTGGAGATGATATGCGAGCCAAAGTATCAGACTTTGGACTCGTTCGACTTGCTCCTGAAGGGAAAACCTCGTTTCAAACTAGACTGGCTGGAACTTTTGGATACATGGCACCAGAATATGCAGCTACTGGGCGACTTACAACAAAGGTTGATGTGTATAGTTTTGGAGTTATTCTTATGGAGATGATAACAGGAAGGAAGGCACTTGATGACAGTCTACCAGAAGAGAACATCCACCTCGTTACATGGTTTCGCAGGATGTTAATAAATAAAGATTCATTCCCAACAACCATTGATCCAACAATTAAGGTTGATGATGAAACGTTACTGAGTATTAGCATTGTTGCAGGGTTAGCAGGACATTGTTGTGCAAGGGAGCCTCACCAACGCCCTGACATGAGTCATGTGGTGAATGTGTTGTCTCCTCTTGTTCAAGTGTGGAAGCCTTCGGAAACAAATGTTCATGAAGCATATGAAATTGACTTTGATATGACATTACCAGAAGCACTCCAAAGGTGGAAACAGTTTGAGGATAATAGCCACACCATTGACATTGATGTAACTTCTTCATCAAGACATCTTAACGCAAACAACACAAACTCAAATCCATAA 2712 0.4023 MRRHELGFGGLFFYDLLFVLSFFVISIRCQDANVMGILKITINAPLSFEWVGQDICKWKHVVCDSSKRVKAIQIGNQNLQGTLPKELAMLTALTRFECQDNNLTGAFPYLSKSLQRLVIHDNNFNLFPSDFFKGMSRLQEVTIDNNPFSQWNIPSSLKDCVALQTFSAQRAGLAGTIPDFFGRDGPFAGLVFLALSDNFLEGGLPASLSGSSIENLLVNGQNGNSKLNGTLAVLSKMKSLKQIWANGNSFTGPIPDLSHHDQLYDVNLRDNQLTGVVPPSLVALPSLKFVNLTNNLLQGSPPRFKDGVAVDNNMDKGRNQYCTNVVEQSCSPLVNVLLSIVQPLGYPLNFAQSWQGNDPCANRWTGVICSGGNVSVINFQNMGLSGTICPCFAGLTSVTKIFFANNNITGTIPNELASLPNLQELDVSNNDIYGKVPSFREGVDVKYEGNPDIGKNEQTNSGHVGHVKNNNTAIIVGVTVMVVVLLVAGVLILVKFRRKAKYEGKLQQQSTIVIPPRYGDGNVAMINSGNISSLLSPSQSVYKGEASNMLIPIQILREATNNFSEGNILGKGGFGTVYKGELHDGTKIAVKRMQSTGFVDQKGQSEFTSEIAVLTKVRHRNLVALLGFCLDGSERLLVYECMPQGALSRHLINWKEEGLKPLEWKTRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKTSFQTRLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEMITGRKALDDSLPEENIHLVTWFRRMLINKDSFPTTIDPTIKVDDETLLSISIVAGLAGHCCAREPHQRPDMSHVVNVLSPLVQVWKPSETNVHEAYEIDFDMTLPEALQRWKQFEDNSHTIDIDVTSSSRHLNANNTNSNP 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium694g00002 903 SUPERFAMILY L domain-like 31 304 - -
Vium694g00002 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Vium694g00002 903 PANTHER OSJNBA0070M12.3 PROTEIN 16 888 - -
Vium694g00002 903 Pfam Leucine rich repeat 392 432 IPR001611 GO:0005515
Vium694g00002 903 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
Vium694g00002 903 SUPERFAMILY Protein kinase-like (PK-like) 551 868 IPR011009 -
Vium694g00002 903 ProSiteProfiles Protein kinase domain profile. 563 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium694g00002 903 Pfam Protein kinase domain 564 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium694g00002 903 ProSitePatterns Protein kinases ATP-binding region signature. 569 591 IPR017441 GO:0005524
Vium694g00002 903 FunFam receptor protein kinase TMK1 642 859 - -
Vium694g00002 903 Gene3D Transferase(Phosphotransferase) domain 1 642 865 - -
Vium694g00002 903 Gene3D Ribonuclease Inhibitor 30 329 IPR032675 -
Vium694g00002 903 SMART serkin_6 563 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium694g00002 903 Pfam Leucine rich repeat N-terminal domain 50 64 IPR013210 -
Vium694g00002 903 Pfam Leucine rich repeat N-terminal domain 336 370 IPR013210 -
Vium694g00002 903 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Vium694g00002 903 CDD STKc_IRAK 569 843 - -
Vium694g00002 903 FunFam receptor-like protein kinase FERONIA 529 641 - -
Vium694g00002 903 Gene3D Phosphorylase Kinase; domain 1 530 640 - -
Vium694g00002 903 FunFam Receptor-like kinase TMK4 29 327 - -
Vium694g00002 903 SUPERFAMILY L domain-like 334 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium694g00002 Vium-Chr694 7864 10987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium694g00002 71 840 Receptor kinase-like Gene Family AT5G07280 31.106 2.25e-82 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vium694g00002 Pkinase 8.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium694g00002 K00924 - gmx:100788903 1381.7