Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6945g00001 ATGTTCCTCAAAATCCAATTTTTGTTCCTCATCCTTTTTCTGGCAGCCACCGTTGGTACCGCCATAGACCCAGGTTCCACTCTTTCAGCCTCTTCCTCCTCCAACCAAACGTGGTCTTCTCCCGGGGGCAGCTTCTCCCTGGGATTCATCTCCGTTCAGCCACCCACCACCCCTCCTTCCTTCATCGCCGCCATCTCCTACACCGGTGGCGACCCTGTTGTCTGGTCCGCTGGACACGGCGCAGCTGTGGACTCCGGCGGGTCCTTACAGTTCCTCTCCTCTGGCAACCTCCGCCTCGTCAACGGCTCCCGCTCCACCGTGTGGGAATCTGCCACGGCGGGCGCCACTTCAGCAGCCCTTGAGGACAATGGAAATTTGGTAATTTCGAACGGCACAAGCATCCTCTGGACAAGCTTTGACAACCCCACAGATACCCTGGTGCAGTCTCAGAATTTCAGTGTTGGTAAGGTTCTCACTTCCGAAAGCTACTTTTTTAGCCTTAGTGGAATTGGGAATTTGACTCTGAAGTGGAACAACAGCATAGAGTACTGGACTCAGGGTTTGAATTCTTCTGTGAATGTTAGTTTGGAGTCCCCTGTGTTGTCTTTGACATCGATTGGGCTTTTAGAACTTTCTGATGTGAACTTGGGTAGTCCTGTTCTTGTTGCATATAGTAGTGACTATGATTTGAATGCTAATGTGTTTAGGGTGTTGAAGTTGGACAATGATGGGAATTTGAGGATTTATAGTACTAGTCTGGGTGGTGGAACTTCTACTGTTAGATGGGCTGCTGTTGCAAATCAATGTGAGGTTTATGCTTACTGTGGGAACTATGGTGTGTGCGGTTACAATGATTCCAGCACGGTATGTGGTTGCCCTTCAGAGAATTTTGAGATGGTTGATCCGAATAATGGTAGGAAAGGGTGCAGGAGGAAGTTGAGTCTGGATAGTTGCCAAGGGACAGCGACCATGTTGACCTTGGATCATGCTGTGGTGTTGAGTTATCCCCCTACAGCGACATCGGAGACTTTTTTCATTGGTTTATCAGCCTGTAGAACGAATTGTCTTTCGGGTTCAAGTGCCTGTTTTGCTTCTACTTCCTTGTCAGATGGCACAGGGCAGTGTGTACTAAGATCAATAGATTTTGTTAGTGGATATCAAGATCCTTCGTTGCCTAGCACTTCTTATTTCAAGGTTTGTCCACCGTTGGCACCAAATCCACCACCCACTTCGGCAGGGACTCTGAGGGAAAGGAGTTCCAAGGTGCCTGCATGGGTTGTGGTTGTGGTTGTTTTGGGTACTCTTTTTGTTTTGCTAGCCTTGGAAGGGGGTTTGTGGATGTGGTGTTGTAGGAATAACAAGAGGTTTGGTGAGTTGTCAGCTCAGTATGCTCTTCTTGAGTATGCTTCTGGTGCTCCAGTGCAGTTCTCGTACAAGGAGCTCCAGCAAGCGACAAAGGGGTTCAAGGAGAAGCTCGGAGCTGGTGGATTTGGTGCTGTTTATAGAGGCACTCTTGTTAACAAAACTGTTGTTGCAGTGAAGCAACTTGAGGGCATTGAGCAAGGTGAGAAGCAGTTTAGGATGGAAGTTGCCACTATAAGTAGCACTCATCATCTGAATTTGGTGAGGCTTATTGGCTTTTGCTCAGAAGGGCGCCACCGGCTTCTGGTTTATGAGTTCATGAAAAATGGATCTCTTGATAATTTTCTATTCCAGACAGAACATCATTCAGGAAAATTGTTGAATTGGGAGTACCGATACAACATCGCTCTTGGCACAGCAAGAGGCATCACATACCTACACGAGGAGTGCCGTGACTGCATAGTCCATTGTGACATCAAACCTGAAAACATTCTCTTGGATGAGAATTATGTTTCCAAAGTCTCTGATTTTGGTCTTGCAAAGCTTATCAATCCCAAGGACCATAGGCATCGGACCTTAACAAGTGTGAGAGGAACCAGAGGATACTTAGCTCCTGAGTGGCTTGCAAACCTTCCTATAACATCCAAATCTGATGTTTACAGCTATGGTATGGTTTTGTTGGAGATTGTGAGTGGAAGAAGGAACTTTGATGTTTCAGAGGAAACAAACAGGAAGAAGTTCTCCATCTGGGCATATGAAGAGTTTGAGAGAGGTAACATCAGTGCAATTTTGGACAAAAGATTAGCTGGGCAAGAAGTTGACATGGAGCAAGTAAGAAGGGCAATTCAAGCAAGCTTTTGGTGCATCCAAGAGCAGCCATCTCAGAGACCAACAATGAGCAGAGTGCTGCAAATGCTAGAAGGAGTAACTGAGGTTGAAAAGCCACCTGCCCCAAAATCAGTGATGGAAGGAACTGTCAGTGGAACCAGCACATACCTCAGTAGCAATGCCAGTGCATTTTCCACTGTTGGAGTTTCACCCCCTGGACCCTCCTCTACATCATCATTTCAGATTAGTGGTGTTTCAACCTTCAACTCAGGAAGGACCCCTGAGAAGGCAACCTCATCTCTTTTACAATCAGACACATGA 2511 0.4687 MFLKIQFLFLILFLAATVGTAIDPGSTLSASSSSNQTWSSPGGSFSLGFISVQPPTTPPSFIAAISYTGGDPVVWSAGHGAAVDSGGSLQFLSSGNLRLVNGSRSTVWESATAGATSAALEDNGNLVISNGTSILWTSFDNPTDTLVQSQNFSVGKVLTSESYFFSLSGIGNLTLKWNNSIEYWTQGLNSSVNVSLESPVLSLTSIGLLELSDVNLGSPVLVAYSSDYDLNANVFRVLKLDNDGNLRIYSTSLGGGTSTVRWAAVANQCEVYAYCGNYGVCGYNDSSTVCGCPSENFEMVDPNNGRKGCRRKLSLDSCQGTATMLTLDHAVVLSYPPTATSETFFIGLSACRTNCLSGSSACFASTSLSDGTGQCVLRSIDFVSGYQDPSLPSTSYFKVCPPLAPNPPPTSAGTLRERSSKVPAWVVVVVVLGTLFVLLALEGGLWMWCCRNNKRFGELSAQYALLEYASGAPVQFSYKELQQATKGFKEKLGAGGFGAVYRGTLVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFQTEHHSGKLLNWEYRYNIALGTARGITYLHEECRDCIVHCDIKPENILLDENYVSKVSDFGLAKLINPKDHRHRTLTSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGRRNFDVSEETNRKKFSIWAYEEFERGNISAILDKRLAGQEVDMEQVRRAIQASFWCIQEQPSQRPTMSRVLQMLEGVTEVEKPPAPKSVMEGTVSGTSTYLSSNASAFSTVGVSPPGPSSTSSFQISGVSTFNSGRTPEKATSSLLQSDT 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6945g00001 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 188 IPR036426 -
Vium6945g00001 836 SMART blect_4 29 142 IPR001480 -
Vium6945g00001 836 Pfam D-mannose binding lectin 73 166 IPR001480 -
Vium6945g00001 836 ProSiteProfiles Protein kinase domain profile. 486 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6945g00001 836 Pfam Protein kinase domain 489 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6945g00001 836 FunFam S-receptor-like serine/threonine-protein kinase 458 560 - -
Vium6945g00001 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 142 264 - -
Vium6945g00001 836 PANTHER OS07G0415500 PROTEIN 8 772 - -
Vium6945g00001 836 Gene3D Transferase(Phosphotransferase) domain 1 561 776 - -
Vium6945g00001 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vium6945g00001 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 561 770 - -
Vium6945g00001 836 CDD STKc_IRAK 492 762 - -
Vium6945g00001 836 Gene3D - 16 140 IPR036426 -
Vium6945g00001 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 141 - -
Vium6945g00001 836 ProSiteProfiles Bulb-type lectin domain profile. 143 261 IPR001480 -
Vium6945g00001 836 Gene3D - 141 264 IPR036426 -
Vium6945g00001 836 MobiDBLite consensus disorder prediction 794 836 - -
Vium6945g00001 836 ProSiteProfiles Bulb-type lectin domain profile. 13 141 IPR001480 -
Vium6945g00001 836 Pfam S-locus glycoprotein domain 231 293 IPR000858 GO:0048544
Vium6945g00001 836 SMART serkin_6 486 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6945g00001 836 ProSitePatterns Protein kinases ATP-binding region signature. 492 514 IPR017441 GO:0005524
Vium6945g00001 836 Gene3D Phosphorylase Kinase; domain 1 453 560 - -
Vium6945g00001 836 SUPERFAMILY Protein kinase-like (PK-like) 469 761 IPR011009 -
Vium6945g00001 836 PIRSF SRK 1 813 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6945g00001 Vium-Chr6945 433 3503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6945g00001 458 770 Receptor kinase-like Gene Family AT5G20050 45.092 5.94e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium6945g00001 Pkinase 7.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6945g00001 - - gmx:100795819 1364.36