Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium693g00055 ATGGAAAATGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCACCAACTCTGCTGGGCTGAAGCTGTCAGTGCCAGACATGAACAACACGAACGTGAGGCAGGCATCTGGAGAGAACAGCAACAACAACCACGCAGCAGATGAGACCAACAACGAATGCACCGTGAGGGAGCAAGACCGTTTTATGCCAATCGCGAATGTGATTAGGATCATGCGAAAGATTCTCCCCCCGCATGCCAAGATCTCTGATGATGCCAAAGAAACAATTCAAGAGTGCGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAATGAGCGTTGCCAGAGGGAACAGCGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTCGAGGGTGACCGAACCTCCATGAGAGGTGAATCACTGGGGAAGAGGACTATTGAATACGCCCCTATGGGTGTTGGCGTTCCCACTGCTTTTGTGCCTCCACCGTTTCACCCCAATGGATACTATGCTCCTGCCATGGGGACTTACGTTGCGCCACCAAACCCTGCGTCATCTCATCACCATGGAATGCCTAGCACTGAACCGAGTTCTCGCTCCATGTGA 663 0.5173 MENGGFHGYRKLPNTTNSAGLKLSVPDMNNTNVRQASGENSNNNHAADETNNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGESLGKRTIEYAPMGVGVPTAFVPPPFHPNGYYAPAMGTYVAPPNPASSHHHGMPSTEPSSRSM 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium693g00055 220 MobiDBLite consensus disorder prediction 200 220 - -
Vium693g00055 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 126 IPR003958 -
Vium693g00055 220 MobiDBLite consensus disorder prediction 10 50 - -
Vium693g00055 220 MobiDBLite consensus disorder prediction 206 220 - -
Vium693g00055 220 MobiDBLite consensus disorder prediction 1 54 - -
Vium693g00055 220 ProSitePatterns NF-YB/HAP3 subunit signature. 93 109 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vium693g00055 220 Gene3D Histone, subunit A 48 167 IPR009072 GO:0046982
Vium693g00055 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 186 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium693g00055 220 FunFam Nuclear transcription factor Y subunit B-6 51 167 - -
Vium693g00055 220 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Vium693g00055 220 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Vium693g00055 220 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Vium693g00055 220 SUPERFAMILY Histone-fold 59 157 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium693g00055 Vium-Chr693 182364 184775 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium693g00055 1 152 CCAAT-HAP3 Transcription Factor Family AT5G47670 72.327 7.63e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium693g00055 CBFD_NFYB_HMF 6.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium693g00055 K08065 - gmx:100194424 330.102