Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium693g00038 ATGAAGCGCCTAAACGACGACGTTGCCAACCCCTCAACGGCGAAGCCAACGTTCCTAACCAAAGCCCAACGCGAGCAATTGGCCCTCCAACGTCGCCAGGAAGAAGTCGCGGAGCAGAAGCGCCGCCAGGAGCAGCTCCTTTCCCACAACCACTCCTCCGATCCCAAACCCTCCTCCGACCGCGATAGAGACAGAGACAGAGAAAGGGACAGAGACCGTGACAACAGGGAGCGCGACCGCGACAGAGACAGGGACAGAGACCGCGATAGGGCACGTGACCGGGACCGGGACCGCGAACCTGAACGCCGAAACAGAGAGAGGGAGCGCGAAGAGGATACCCGGGCCCGTGAGCGAGCTCGGTCGGAGAAACTCGCGGAGCGCGAGAGGGCACGTGACCGGGACCGCGAGGCCGAGCGCCGCAACAGAGAAAGGGAGCGTGAAGAGGAGACCCGGGCACGCGAGCGAGCTCGCTTGGAGAAACTCGCGGAGCGCGAGCGCGAGAAGGAGCTTGAGTCCATCAAGGAGCAGTACCTGGGCTCAAAGAAGCCCAAGAAGCGCGTGATCAAGCCCAGCGAGAAGTTCCGGTTCTCCTTCGACTGGGAGAACACGGAGGACACTTCGCGCGACATGAACGCTCTTTACCAGAACCCCCACGAAGCTCAGCTCCTCTTCGGCCGCGGCTTCCGTGCTGGCATGGATCGCCGTGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAAGAGATGCGCGAGCAAATCCGCAAGAAGGACGGCCTCGAGGAGAAGCCCGAGGAGGCCGACGCTCAGCGCCGCAAGGAGGCCGCCGCCGATCTCTACGACACCTTCGACATGCGAGTGGACCGCCACTGGAGCGAGAAGAAGCTCGAAGAGATGACCGAGAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTATAAGGGTTCCAAGATTCCTCGCCCCATGAGGAGCTGGATCGAGAGCAAGTTGAGCCAGGAGCTCTTGAAAGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAGATGGCAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCTGAGACTGGTTCCGGGAAAACCGCGGCGTTTGTGCTTCCCATGTTGAGCTACATCACCAGACTTCCTCCCATGAGTGAGGACAACGACGCCGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATTGAGGATGAGACTGTTAAGTTTGCGCAGTATTTGGGAATCAAAGTGGTGTCCATTGTTGGTGGGCAATCCATTGAGGAGCAAGGGTTTAAGATCAGGCAGGGCTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGCTTGGAACGGCGCTATGCTGTTCTAAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGATCGCATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGTGTCCTTGATGCCATGCCTTCCAGCAATCTCAAACCGGAGAATGAAGATGAGGAGCTTGATGAGAAGAAGATTTACCGGACCACTTATATGTTCAGCGCCACAATGCCCCCTGCTGTGGAGAGGCTTGCAAGGAAGTATTTGAGGAACCCTGTTGTGGTCACCATCGGCACTGCTGGAAAGGCAACTGATTTGATCAGCCAGCATGTGATCATGATGAAGGAGTCTGAGAAATTTTACAAGCTTCAGAGATTGCTTGACGAGCTTAACGACAAGACTGCGATCGTGTTTGTCAACACCAAAAAGAATGCGGATATGGTTGCGAAGAATTTGGACAAGGAAGGGTATCGCGTGACCACTTTGCATGGAGGGAAGTCGCAGGAGCAGAGAGAGATTAGTCTTGAGGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCCACTGACGTTGCCGGACGTGGGATTGACATACCTGATGTCGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAACGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTCAAGCAGATGCTCGTTCAAAGTAACAGTCCTGTTCCACCTGAATTGGCAAGGCACGAAGCTTCAAAATTCAAGCCAGGAACGATTCCTGACAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAA 2232 0.5457 MKRLNDDVANPSTAKPTFLTKAQREQLALQRRQEEVAEQKRRQEQLLSHNHSSDPKPSSDRDRDRDRERDRDRDNRERDRDRDRDRDRDRARDRDRDREPERRNREREREEDTRARERARSEKLAERERARDRDREAERRNREREREEETRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGLEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWIESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNDAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIETYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLVQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium693g00038 743 FunFam probable ATP-dependent RNA helicase DDX23 554 742 - -
Vium693g00038 743 MobiDBLite consensus disorder prediction 10 26 - -
Vium693g00038 743 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 258 720 - -
Vium693g00038 743 MobiDBLite consensus disorder prediction 1 186 - -
Vium693g00038 743 Gene3D - 284 553 IPR027417 -
Vium693g00038 743 MobiDBLite consensus disorder prediction 718 743 - -
Vium693g00038 743 Pfam DEAD/DEAH box helicase 348 538 IPR011545 GO:0003676|GO:0005524
Vium693g00038 743 SMART helicmild6 600 681 IPR001650 -
Vium693g00038 743 Coils Coil 19 42 - -
Vium693g00038 743 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 323 351 IPR014014 GO:0003724
Vium693g00038 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 576 720 IPR001650 -
Vium693g00038 743 Pfam Helicase conserved C-terminal domain 575 681 IPR001650 -
Vium693g00038 743 SMART ultradead3 342 564 IPR014001 -
Vium693g00038 743 MobiDBLite consensus disorder prediction 27 182 - -
Vium693g00038 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 354 549 IPR014001 -
Vium693g00038 743 MobiDBLite consensus disorder prediction 710 743 - -
Vium693g00038 743 CDD DEADc_DDX23 334 550 - -
Vium693g00038 743 MobiDBLite consensus disorder prediction 240 271 - -
Vium693g00038 743 FunFam probable ATP-dependent RNA helicase DDX23 284 553 - -
Vium693g00038 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 702 IPR027417 -
Vium693g00038 743 Gene3D - 554 741 IPR027417 -
Vium693g00038 743 Coils Coil 102 171 - -
Vium693g00038 743 Coils Coil 235 261 - -
Vium693g00038 743 CDD SF2_C_DEAD 561 690 - -
Vium693g00038 743 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 478 486 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium693g00038 Vium-Chr693 119569 122768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium693g00038 330 730 Eukaryotic Initiation Factors Gene Family AT3G13920 33.582 1.68e-60 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium693g00038 K12858 - gmx:100799264 1129.39