Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6937g00001 ATGGAAGGGCTCAAACATATTCACGAGCAGGGTTTCGTTCACTGCGACGTGAAGCTTCAGAACGTTCTCGTTTTCGACGGCGAGGTGAAAATCGCGAACTACGAGCTCGCCAAGGAGAAGGGGGAGAAACAAGGGAAGTGCGAGTTCAGGGGAACGCCGTTGTTTATGTCGTCGGAATCGGTGAACGATAATGAATATGAGCCGCCGGCGGATATTTGGGCGTTGGGATGCGCCGTCATGGAGATGGTGACCGGAAAACCCGCGTGGGATGTTAGCAACGGTTGA 285 0.5368 MEGLKHIHEQGFVHCDVKLQNVLVFDGEVKIANYELAKEKGEKQGKCEFRGTPLFMSSESVNDNEYEPPADIWALGCAVMEMVTGKPAWDVSNG 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6937g00001 94 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
Vium6937g00001 94 Pfam Protein kinase domain 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6937g00001 94 Gene3D Transferase(Phosphotransferase) domain 1 1 94 - -
Vium6937g00001 94 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 90 - -
Vium6937g00001 94 SUPERFAMILY Protein kinase-like (PK-like) 2 93 IPR011009 -
Vium6937g00001 94 ProSiteProfiles Protein kinase domain profile. 1 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6937g00001 Vium-Chr6937 249 1217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6937g00001 1 94 MAP Kinase Kinase Kinase AT4G36950 57.895 1.12e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium6937g00001 Pkinase 3.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6937g00001 - - vum:124844365 201.06