LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6925g00003	ATGGCTGCGAAAAGATTGTTCAATGATTCTGAACGAGACCCTGATGAGCCAGACGACAAACGGATAAGAAATAACGCTACCACACCTTCTTTTGCTTCTGTAATAGGTGAAGTGGTCATGATAAAGAACTTTGAGAATCTTTTCACTGCAATGGAACCTGTGCTTAAAAGAGTGGTGGGTGAGGAAGTTGAGCGAGTTATGAGACAGTGGTCACGCTCCTTTACCAGGTCTCCTTCGTTGAGACTCCAAGCAATGGAGCAGCTATCAAGCCTGCAATTATGCTTCAGCAGGAAGCTTTTTCTTCCAATTTTCACAGGTAGCAGGATTCTTGACGTTGATGAGAACCCCATCAACATAGTTCTGATGGACAGAAGCAACAACAACGAAATGGTCCCCACAAGTCTCCCACATGCTATCAAGCTCGAGATTCTGGTTATTGATGGAGATTTTTCTCCTTCTGAAAACGAGGATTGGACGAGTGATGAATTTAACAGACACATAGTGAAGGAAAGACATGGGAAGCGACCTTTACTTGCAGGAGAATTGAACTTGATCATGCGAGATGGAATTGCACCAGCTGGGGACATGGAATTCACAGATAACTCTAGTTGGATCCGCTGCAGGAAGTTCAGAGTTGCAGTGAGGGTAGCACCAGGGAGTAACCAAGGAGTTCGAATTCGTGAAGGAATGACTGAAGCATTTATGGTCAAGGATCACCGTGGAGAATTGTACAAAAAACACTACCCTCCAATGCTTGATGACGAAGTGTGGCGCCTGGAAAAGATAGGTAAAGATGGAGCTTTCAACAAAAAGTTGTCTTCGCAGGGCTTAAAAACAGTTCAAGAATTTCTTAAACTAGCAGTAGTTGACACTCTCAAGCTTAGAAATATTTTGGGCGTGGGGATGTCAGACAAAATGTGGGAAGTGACAATCAAGCATGCAATGACTTGTGACATAGGGAGCAAGTTGTACATTTATCGTGGACCACAGTTTATTATTTTTCTGGATCCAATATGCAGATTAATTAGAGCAGACATCAGTGGACAGACATTTTCCAACAGAGATCAAATCACCAATTTGAATAAGACCTATGTAGACAAATTGGTGAGAGATGCATACGCGAGATGGCCTAGCTTGGAGGTGATAGATGCGGTTCTGAACGATAACATTGCTGTGTTAACCCAAGGTGATCAAACTTCTGTCTCAGTAGCCACATATGATCAGAATCAGTATTACAGTGGCCAATCTGCTAGCTATGTTGCAAATAACAACACACAGATGGGAAGCAGCGAGTGGTCACTGTATCAAGCCTACAGCACATTGCCGTTTGCTAATGGTTTTCCTTCTAATTTCTCAGCAACACAAACAGATGGAGACATGACCGCTTCAGGTTCAAGCTCTGGATGTTGA	1410	0.4319	MAAKRLFNDSERDPDEPDDKRIRNNATTPSFASVIGEVVMIKNFENLFTAMEPVLKRVVGEEVERVMRQWSRSFTRSPSLRLQAMEQLSSLQLCFSRKLFLPIFTGSRILDVDENPINIVLMDRSNNNEMVPTSLPHAIKLEILVIDGDFSPSENEDWTSDEFNRHIVKERHGKRPLLAGELNLIMRDGIAPAGDMEFTDNSSWIRCRKFRVAVRVAPGSNQGVRIREGMTEAFMVKDHRGELYKKHYPPMLDDEVWRLEKIGKDGAFNKKLSSQGLKTVQEFLKLAVVDTLKLRNILGVGMSDKMWEVTIKHAMTCDIGSKLYIYRGPQFIIFLDPICRLIRADISGQTFSNRDQITNLNKTYVDKLVRDAYARWPSLEVIDAVLNDNIAVLTQGDQTSVSVATYDQNQYYSGQSASYVANNNTQMGSSEWSLYQAYSTLPFANGFPSNFSATQTDGDMTASGSSSGC	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6925g00003	469	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vium6925g00003	469	Pfam	Calmodulin binding protein-like N-terminal domain	91	239	IPR046831	-
	Vium6925g00003	469	Pfam	Calmodulin binding protein C-terminal domain	322	381	IPR046829	-
	Vium6925g00003	469	PANTHER	OS02G0177800 PROTEIN	2	440	IPR012416	GO:0005516
	Vium6925g00003	469	MobiDBLite	consensus disorder prediction	1	25	-	-
	Vium6925g00003	469	Pfam	Calmodulin binding protein central domain	251	317	IPR046830	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6925g00003	Vium-Chr6925	18459	22629	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6925g00003	13	376	Calmodulin-binding Proteins	AT5G57580	46.237	4.26e-108	332

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6925g00003	-		-	gmx:100792405	724.161