Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6925g00001 ATGTCTAATGGTTCTCTTGACAAGTTTATTTACAATAAGGGAGTCAAAGCCATTCCATCGTTGAGTTGGGATAATTTGTGGCAAATTGCCAAAGGGATAGCTCAAGGACTAGAATACTTGCACAAGGGATGCAACACTCGCATTTTACATTTTGACATAAAACCACACAACATACTTCTGGATGAAAGTTTTTGTCCCAAGATATCAGATTTTGGACTGGCAAAGCTTTGTCCCATGAAAGAGAGCACTATTTTCATGTCAGATCAAAGAGGAACAATAGGGTATAAAGCTCCAGAAGTGTGGAACAGACATCTTGGTGGAGTTTCACACAAATCTGATGTTTACAGTTATGGAATGATGCTGCTAGAAATGGTGGGAGGGAGAAGAAACATTAATGCAGATGCCAATCACCGAAGTGAGATATACTTCCCACACTGGGCATACAACAGGCTAAAGCAGGGTAGAGAATTGAGAGCTGATTGGGTGATAACCACAGAAGAACAGGAAATAGCGAGGAGAATGACCATAGTGGGATTATGGTGTGTTCAAACGATTCCACATGATAGGACTACATGA 576 0.408 MSNGSLDKFIYNKGVKAIPSLSWDNLWQIAKGIAQGLEYLHKGCNTRILHFDIKPHNILLDESFCPKISDFGLAKLCPMKESTIFMSDQRGTIGYKAPEVWNRHLGGVSHKSDVYSYGMMLLEMVGGRRNINADANHRSEIYFPHWAYNRLKQGRELRADWVITTEEQEIARRMTIVGLWCVQTIPHDRTT 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6925g00001 191 SMART serkin_6 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6925g00001 191 SUPERFAMILY Protein kinase-like (PK-like) 1 190 IPR011009 -
Vium6925g00001 191 Pfam Protein kinase domain 3 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6925g00001 191 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6925g00001 191 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 190 IPR045874 GO:0004672
Vium6925g00001 191 FunFam PR5-like receptor kinase 1 191 - -
Vium6925g00001 191 Gene3D Transferase(Phosphotransferase) domain 1 1 191 - -
Vium6925g00001 191 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6925g00001 Vium-Chr6925 739 1696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6925g00001 1 189 Receptor kinase-like Gene Family AT4G18250 55.897 4.45e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium6925g00001 Pkinase 9.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6925g00001 - - gmx:100792936 329.331