Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6920g00012 ATGGCAAGGCGTCCCACAAGCAACACTTACGAAGAGGCTAGAAAACAGAGACTTGAAGAAAACAAAAAGAGGTTTGAGGATTTAGGAATTTTAAGGATTTCAAAAAATTTGACCGAGATCACAAATTCTGGAAAGAAGACACGGGATCATGTTCCTAAACTGAAATCAAAGAAATCAAATGCTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGGAACCCAGTTCCTTCTTACAGGGAAGATGTGAGCGTACACCTTCCAGCTTTGAGGAAGAGGTCAAGATCAAATTCTTCAACATGGGGAAGTTACATTGCGAGGCCTTTAGATGAAATCAAAGAAGCCTCAAAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCAGAAGAACTCCAAATCAATTTGAACTCTTCAAATCCCTCCTTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAGTTTTGTGAGGAACATCTTCCAAAAACTGTATATGACATGGTTTTAGAAGATGAAAATGGTTCAGAATACCAGGCTGTTTACATAGGCAACAGAGCTGGATTAAGCGGAGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAAGCATCGAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATTTAGTTGAAGAAAAGGGAAATGATATTTTAGTTGAAGAAGGAAACAAGCATGCAACCAAAGTACCGAAAACTAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAAGCCAAGACAGGAAACATATGAAACTAGTGAATCAGAGAGTTCTCAGGAGCATATTGACAAAGAAGTGAAGCCACAGGGTGCAAATCCATTGAAGCAAACTAAAATCTCTAAGAAAAAAACGCAAAAGAAATCAATACTTTTGGCTACTACAGATTCGAAAGGGAAAGTGCAATTGAAAACTGAGGAACCAATGTTGTCTGTAGTGCTGTCAAAGACAAGGAAGTCAAAGGGTATCAATGGAATTGATGACTCAGACAAGTTAGAGAAGAAAATTTGTGTTCATGATGCTGATAGCAAGTTAGAAAAGGTTGAAGAAGCAAGCAAATGTGTGGTACAGACAGCTAGAAAAAAACCAGGTCCAAAGTATTTCAGAAAGAAAGCATAA 1191 0.3862 MARRPTSNTYEEARKQRLEENKKRFEDLGILRISKNLTEITNSGKKTRDHVPKLKSKKSNAEVEPRRSSRVRNPVPSYREDVSVHLPALRKRSRSNSSTWGSYIARPLDEIKEASKEERLCALEAAEELQINLNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVYDMVLEDENGSEYQAVYIGNRAGLSGGWRAFALDHKLDDGDALVFELIEASRFKIYIVRAFPNLVEEKGNDILVEEGNKHATKVPKTKCNLESESKTKKPRQETYETSESESSQEHIDKEVKPQGANPLKQTKISKKKTQKKSILLATTDSKGKVQLKTEEPMLSVVLSKTRKSKGINGIDDSDKLEKKICVHDADSKLEKVEEASKCVVQTARKKPGPKYFRKKA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6920g00012 396 MobiDBLite consensus disorder prediction 253 293 - -
Vium6920g00012 396 MobiDBLite consensus disorder prediction 40 74 - -
Vium6920g00012 396 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 53 230 IPR044837 -
Vium6920g00012 396 MobiDBLite consensus disorder prediction 42 69 - -
Vium6920g00012 396 SUPERFAMILY DNA-binding pseudobarrel domain 135 229 IPR015300 -
Vium6920g00012 396 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Vium6920g00012 396 Pfam B3 DNA binding domain 140 228 IPR003340 GO:0003677
Vium6920g00012 396 MobiDBLite consensus disorder prediction 253 311 - -
Vium6920g00012 396 Coils Coil 8 28 - -
Vium6920g00012 396 Gene3D - 115 231 IPR015300 -
Vium6920g00012 396 SMART B3_2 140 231 IPR003340 GO:0003677
Vium6920g00012 396 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6920g00012 Vium-Chr6920 46991 53013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6920g00012 10 233 B3 DNA Binding Superfamily AT5G58280 53.360 1.31e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium6920g00012 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6920g00012 - - vra:106764146 702.59