LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6920g00010	ATGGCAAGGCGTCCCACAAGCAACACTTACGAAGAGGCTAGAAAACAGAGACTTGAAGAAAACAAAAAGAGGTTTGAGGATTTAGGAATTTTAAGGATTTCAAAAAATTTGACCGAGATCACAAATTCTGGAAAGAAGACACGGGATCATGTTCCTAAACTGAAATCAAAGAAATCAAATGCTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGGAACCCAGTTCCTTCTTACAGGGAAGATGTGAGCGTACACCTTCCAGCTTTGAGGAAGAGGTCAAGATCAAATTCTTCAACATGGGGAAGTTACATTGCGAGGCCTTTAGATGAAATCAAAGAAGCCTCAAAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCAGAAGAACTCCAAATCAATTTGAACTCTTCAAATCCCTCCTTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAGTTTTGTGAGGAACATCTTCCAAAAACTGTATATGACATGGTTTTAGAAGATGAAAATGGTTCAGAATACCAGGCTGTTTACATAGGCAACAGAGCTGGATTAAGCGGAGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAAGCATCGAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATTTAGTTGAAGAAAAGGGAAATGATATTTTAGTTGAAGAAGGAAACAAGCATGCAACCAAAGTACCGAAAACTAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAAGCCAAGACAGGAAACATATGAAACTAGTGAATCAGAGAGTTCTCAGGAGCATATTGACAAAGAAGTGAAGCCACAGGGTGCAAATCCATTGAAGCAAACTAAAATCTCTAAGAAAAAAACGCAAAAGAAATCAATACTTTTGGCTACTACAGATTCGAAAGGGAAAGTGCAATTGAAAACTGAGGAACCAATGTTGTCTGTAGTGCTGTCAAAGACAAGGAAGTCAAAGGGTATCAATGGAATTGATGACTCAGACAAGTTAGAGAAGAAAATTTGTGTTCATGATGCTGATAGCAAGTTAGAAAAGGTTGAAGAAGCAAGCAAATGTGTGGTACAGACAGCTAGAAAAAAACCAGGTCCAAAGTATTTCAGAAAGAAAGCATAA	1191	0.3862	MARRPTSNTYEEARKQRLEENKKRFEDLGILRISKNLTEITNSGKKTRDHVPKLKSKKSNAEVEPRRSSRVRNPVPSYREDVSVHLPALRKRSRSNSSTWGSYIARPLDEIKEASKEERLCALEAAEELQINLNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVYDMVLEDENGSEYQAVYIGNRAGLSGGWRAFALDHKLDDGDALVFELIEASRFKIYIVRAFPNLVEEKGNDILVEEGNKHATKVPKTKCNLESESKTKKPRQETYETSESESSQEHIDKEVKPQGANPLKQTKISKKKTQKKSILLATTDSKGKVQLKTEEPMLSVVLSKTRKSKGINGIDDSDKLEKKICVHDADSKLEKVEEASKCVVQTARKKPGPKYFRKKA	396

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium6920g00010	396	MobiDBLite	consensus disorder prediction	253	293	-	-
Vium6920g00010	396	MobiDBLite	consensus disorder prediction	40	74	-	-
Vium6920g00010	396	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	53	230	IPR044837	-
Vium6920g00010	396	MobiDBLite	consensus disorder prediction	42	69	-	-
Vium6920g00010	396	SUPERFAMILY	DNA-binding pseudobarrel domain	135	229	IPR015300	-
Vium6920g00010	396	ProSiteProfiles	B3 DNA-binding domain profile.	140	231	IPR003340	GO:0003677
Vium6920g00010	396	Pfam	B3 DNA binding domain	140	228	IPR003340	GO:0003677
Vium6920g00010	396	MobiDBLite	consensus disorder prediction	253	311	-	-
Vium6920g00010	396	Coils	Coil	8	28	-	-
Vium6920g00010	396	Gene3D	-	115	231	IPR015300	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6920g00010	Vium-Chr6920	46847	53013	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6920g00010	10	233	B3 DNA Binding Superfamily	AT5G58280	53.360	1.31e-75	235

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Vium6920g00010		B3	1.3e-16	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6920g00010	-		-	vra:106764146	702.59

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