Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6920g00009 ATGTTTTGTGCGCAAAGCTTCACTATGAGAAAGGGTGGCACAATCAACACTTACGAAGAGGCCAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAGATCACGAGTTCTGCAAAGAAGTCAGGGCATCATGTTCATAAACTGAAACCAAAGAAGTCAAATGGTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGGAACCCAGTTCCTTCGTACAGAGAAGATGTGAGTATACACCTTCCAGCTTTGCGGAAGAGATCAATATCTTCAACACGGGGAAGTTACACTGCGAGGCCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTTTATGCTCTGGAGGCTGCGGAGGCACTCCAAATCAATTTGAACTCTTCATATCCCTCATTTATCAAGTCGATGCTTTGGTCTCACGTTTACAGGGGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATTTTCCAAAAACTGTGTGTGACATGGTTTTAGAAGATGAAAACGGCTCAGAATACAAGGCTGTTTACATAGGCAACAAAAGTGGACTTAGCGGTGGTTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAACCATCGAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATTTAGTTGAAGAAAAGGGAAATGATATTTTAGTTGAAGAAGGAAACAAGCATGCAACCAAAGTACCGAAAACTAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAAGCCAAGACAGGAAACATATGAAACTAGTGAATCAGAGAGTTCTCAGGAGCATATTGACAAAGAAGTGAAGCCACAGGGTGCAAATCCATTGAAGCAAACTAAAATCTCTAAGAAAAAAACGCAAAAGAAATCAATACTTTTGGCTACTACAGATTCGAAAGGGAAAGTGCAATTGAAAACTGAGGAACCAATGTTGTCTGTAGTGCTGTCAAAGACAAGGAAGTCAAAGGGTATCAATGGAATTGATGACTCAGACAAGTTAGAGAAGAAAATTTGTGTTCATGATGCTGATAGCAAGTTAGAAAAGGTTGAAGAAGCAAGCAAATGTGTGGTACAGACAGCTAGAAAAAAACCAGGTCCAAAGTATTTCAGAAAGAAAGCATAA 1209 0.3904 MFCAQSFTMRKGGTINTYEEARKQRLEENKKRFEDLGISRISKNLTEITSSAKKSGHHVHKLKPKKSNGEVEPRRSSRVRNPVPSYREDVSIHLPALRKRSISSTRGSYTARPLDEIKEATEEERLYALEAAEALQINLNSSYPSFIKSMLWSHVYRGFWLGLPSKFCEEHFPKTVCDMVLEDENGSEYKAVYIGNKSGLSGGWRAFALDHKLDDGDALVFELIEPSRFKIYIVRAFPNLVEEKGNDILVEEGNKHATKVPKTKCNLESESKTKKPRQETYETSESESSQEHIDKEVKPQGANPLKQTKISKKKTQKKSILLATTDSKGKVQLKTEEPMLSVVLSKTRKSKGINGIDDSDKLEKKICVHDADSKLEKVEEASKCVVQTARKKPGPKYFRKKA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6920g00009 402 MobiDBLite consensus disorder prediction 259 299 - -
Vium6920g00009 402 MobiDBLite consensus disorder prediction 51 82 - -
Vium6920g00009 402 Pfam B3 DNA binding domain 146 234 IPR003340 GO:0003677
Vium6920g00009 402 Gene3D - 120 237 IPR015300 -
Vium6920g00009 402 ProSiteProfiles B3 DNA-binding domain profile. 146 237 IPR003340 GO:0003677
Vium6920g00009 402 SMART B3_2 146 237 IPR003340 GO:0003677
Vium6920g00009 402 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 52 236 IPR044837 -
Vium6920g00009 402 SUPERFAMILY DNA-binding pseudobarrel domain 139 235 IPR015300 -
Vium6920g00009 402 Coils Coil 16 36 - -
Vium6920g00009 402 MobiDBLite consensus disorder prediction 259 311 - -
Vium6920g00009 402 CDD B3_DNA 144 235 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6920g00009 Vium-Chr6920 40598 53017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6920g00009 18 239 B3 DNA Binding Superfamily AT5G58280 49.801 5.16e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium6920g00009 B3 4.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6920g00009 - - vra:106764146 640.958