Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6920g00008 ATGTTTTGTGCGCAAAGCTTCACTCAGATGAGAAAGGGTGGCACAATCAACACTTACGAAGAGGCCAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAGATCACGAGTTCTGCAAAGAAGTCAGGGCATCATGTTCATAAACTGAAACCAAAGAAGTCAAATGGTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGGAACCCAGTTCCTTCGTACAGAGAAGATGTGAGTATACACCTTCCAGCTTTGCGGAAGAGATCAATATCTTCAACACGGGGAAGTTACACTGCGAGGCCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTTTATGCTCTGGAGGCTGCGGAGGCACTCCAAATCAATTTGAACTCTTCATATCCCTCATTTATCAAGTCGATGCTTTGGTCTCACGTTTACAGGGGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATTTTCCAAAAACTGTGTGTGACATGGTTTTAGAAGATGAAAACGGCTCAGAATACAAGGCTGTTTACATAGGCAACAAAAGTGGACTTAGCGGTGGTTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAACCATCGAGATTTAAGATTCATATTGTAAGAGCATATCCAAATTTAGTTGAAGAAAAGGGAAATGATATTTTAGTTGGAGAAGGAAATATGCATGCAACTAAAGTGCGGAAAGCAAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAAGCCAAAACGGGCAGCCTCATGTGAAACTAATGAATCAGAGAGTTCTCAGGAGCATATCGACAAAAATGTCAAGCCACAAGGTGTAAATCCAACTAAGCGAACTAGAATCTCTAAGAAAAAAACACAAAAGAAATCTATACTTTTGGCTACCACAGATTTGAAAGGGAAAGTGCAATTGAAAACTGAGAAACCCGTGGTGTCTCTAGTGCTGTCAAAGAAGACAAAGAAGTCAAAGGGTATCAACGGAACTCACTACTCAGGCAACTTAGAGAAGAAACTGTGTTCATGA 1116 0.4014 MFCAQSFTQMRKGGTINTYEEARKQRLEENKKRFEDLGISRISKNLTEITSSAKKSGHHVHKLKPKKSNGEVEPRRSSRVRNPVPSYREDVSIHLPALRKRSISSTRGSYTARPLDEIKEATEEERLYALEAAEALQINLNSSYPSFIKSMLWSHVYRGFWLGLPSKFCEEHFPKTVCDMVLEDENGSEYKAVYIGNKSGLSGGWRAFALDHKLDDGDALVFELIEPSRFKIHIVRAYPNLVEEKGNDILVGEGNMHATKVRKAKCNLESESKTKKPKRAASCETNESESSQEHIDKNVKPQGVNPTKRTRISKKKTQKKSILLATTDLKGKVQLKTEKPVVSLVLSKKTKKSKGINGTHYSGNLEKKLCS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6920g00008 371 MobiDBLite consensus disorder prediction 267 296 - -
Vium6920g00008 371 Gene3D - 121 238 IPR015300 -
Vium6920g00008 371 Coils Coil 17 37 - -
Vium6920g00008 371 SMART B3_2 147 238 IPR003340 GO:0003677
Vium6920g00008 371 Pfam B3 DNA binding domain 147 236 IPR003340 GO:0003677
Vium6920g00008 371 CDD B3_DNA 145 236 IPR003340 GO:0003677
Vium6920g00008 371 MobiDBLite consensus disorder prediction 50 83 - -
Vium6920g00008 371 ProSiteProfiles B3 DNA-binding domain profile. 147 238 IPR003340 GO:0003677
Vium6920g00008 371 MobiDBLite consensus disorder prediction 350 371 - -
Vium6920g00008 371 MobiDBLite consensus disorder prediction 267 319 - -
Vium6920g00008 371 SUPERFAMILY DNA-binding pseudobarrel domain 140 236 IPR015300 -
Vium6920g00008 371 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 53 237 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6920g00008 Vium-Chr6920 40594 45111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6920g00008 19 240 B3 DNA Binding Superfamily AT5G58280 49.402 8.41e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium6920g00008 B3 2.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6920g00008 - - vra:106764146 545.814