Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6920g00007 ATGAGAAAGGGTGGCACAATCAACACTTACGAAGAGGCCAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAGATCACGAGTTCTGCAAAGAAGTCAGGGCATCATGTTCATAAACTGAAACCAAAGAAGTCAAATGGTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGGAACCCAGTTCCTTCGTACAGAGAAGATGTGAGTATACACCTTCCAGCTTTGCGGAAGAGATCAATATCTTCAACACGGGGAAGTTACACTGCGAGGCCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTTTATGCTCTGGAGGCTGCGGAGGCACTCCAAATCAATTTGAACTCTTCATATCCCTCATTTATCAAGTCGATGCTTTGGTCTCACGTTTACAGGGGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATTTTCCAAAAACTGTGTGTGACATGGTTTTAGAAGATGAAAACGGCTCAGAATACAAGGCTGTTTACATAGGCAACAAAAGTGGACTTAGCGGTGGTTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAACCATCGAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATTTAGTTGAAGAAAAGGGAAATGATATTTTAGTTGAAGAAGGAAACAAGCATGCAACCAAAGTACCGAAAACTAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAAGCCAAGACAGGAAACATATGAAACTAGTGAATCAGAGAGTTCTCAGGAGCATATTGACAAAGAAGTGAAGCCACAGGGTGCAAATCCATTGAAGCAAACTAAAATCTCTAAGAAAAAAACGCAAAAGAAATCAATACTTTTGGCTACTACAGATTCGAAAGGGAAAGTGCAATTGAAAACTGAGGAACCAATGTTGTCTGTAGTGCTGTCAAAGACAAGGAAGTCAAAGGGTATCAATGGAATTGATGACTCAGACAAGTTAGAGAAGAAAATTTGTGTTCATGATGCTGATAGCAAGTTAGAAAAGGTTGAAGAAGCAAGCAAATGTGTGGTACAGACAGCTAGAAAAAAACCAGGTCCAAAGTATTTCAGAAAGAAAGCATAA 1185 0.3899 MRKGGTINTYEEARKQRLEENKKRFEDLGISRISKNLTEITSSAKKSGHHVHKLKPKKSNGEVEPRRSSRVRNPVPSYREDVSIHLPALRKRSISSTRGSYTARPLDEIKEATEEERLYALEAAEALQINLNSSYPSFIKSMLWSHVYRGFWLGLPSKFCEEHFPKTVCDMVLEDENGSEYKAVYIGNKSGLSGGWRAFALDHKLDDGDALVFELIEPSRFKIYIVRAFPNLVEEKGNDILVEEGNKHATKVPKTKCNLESESKTKKPRQETYETSESESSQEHIDKEVKPQGANPLKQTKISKKKTQKKSILLATTDSKGKVQLKTEEPMLSVVLSKTRKSKGINGIDDSDKLEKKICVHDADSKLEKVEEASKCVVQTARKKPGPKYFRKKA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6920g00007 394 MobiDBLite consensus disorder prediction 251 291 - -
Vium6920g00007 394 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 45 228 IPR044837 -
Vium6920g00007 394 ProSiteProfiles B3 DNA-binding domain profile. 138 229 IPR003340 GO:0003677
Vium6920g00007 394 SMART B3_2 138 229 IPR003340 GO:0003677
Vium6920g00007 394 Pfam B3 DNA binding domain 138 226 IPR003340 GO:0003677
Vium6920g00007 394 Coils Coil 8 28 - -
Vium6920g00007 394 MobiDBLite consensus disorder prediction 251 303 - -
Vium6920g00007 394 Gene3D - 112 229 IPR015300 -
Vium6920g00007 394 SUPERFAMILY DNA-binding pseudobarrel domain 131 227 IPR015300 -
Vium6920g00007 394 CDD B3_DNA 136 227 IPR003340 GO:0003677
Vium6920g00007 394 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6920g00007 Vium-Chr6920 40504 53017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6920g00007 10 231 B3 DNA Binding Superfamily AT5G58280 49.801 2.99e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium6920g00007 B3 4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6920g00007 - - vra:106764146 639.032