Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6919g00006 ATGGCCACAGAAGAAGAAATTTCAACTCTGAAACTGATGCGCCAATATCTCTTGGGAGATATTTCAGACCCGTTTCTCACCAATCTCATCCCTGTAAAAGTTGAAGACTCCTCATCAGAACTTGATTTGGATTCAAACTCTTCAGAACAAAGCAACTTCTGCAGGTTTCTAGAATACTTTGATTTTGAAGCAGACAAAAAACCGACAGATCTCGCTTCTCATCATAATATCCAAAACTCCATTGCTACAAGTCCACTCAAGAATTCTGATTTGGCAGATCCAATTTTGCCAGTGAAAAAGGAAGTAACATGTTGTTATGAGGCCAGGCGTTACAGAGGAGTGAGGAGAAGACCATGGGGGAAGTTTGCTGCAGAAATCCGTGACCCCAAAAGAAAAGGAAGCAGGGTGTGGCTAGGTACGTATGACACTGAAATTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGAGGTCAAAAGGCTGTATTGAATTTCCCCTTGGAGGCTGGAAGGTCTCATCCAGAACCCAACACTTCTGGCAGGAAGAGAAGAAGAGACTGCACTGCAACTGTCACAACTTCAACTCATGTATGTCATGAAAAATAA 612 0.4265 MATEEEISTLKLMRQYLLGDISDPFLTNLIPVKVEDSSSELDLDSNSSEQSNFCRFLEYFDFEADKKPTDLASHHNIQNSIATSPLKNSDLADPILPVKKEVTCCYEARRYRGVRRRPWGKFAAEIRDPKRKGSRVWLGTYDTEIDAAKAYDCAAFRMRGQKAVLNFPLEAGRSHPEPNTSGRKRRRDCTATVTTSTHVCHEK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6919g00006 203 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Vium6919g00006 203 FunFam Ethylene-responsive transcription factor 2 109 170 - -
Vium6919g00006 203 PANTHER DNA-BINDING DOMAIN 72 177 IPR044808 GO:0003700|GO:0009873
Vium6919g00006 203 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Vium6919g00006 203 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Vium6919g00006 203 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Vium6919g00006 203 PRINTS Ethylene responsive element binding protein signature 150 170 IPR001471 GO:0003700|GO:0006355
Vium6919g00006 203 MobiDBLite consensus disorder prediction 170 203 - -
Vium6919g00006 203 MobiDBLite consensus disorder prediction 177 191 - -
Vium6919g00006 203 CDD AP2 118 168 IPR001471 GO:0003700|GO:0006355
Vium6919g00006 203 SUPERFAMILY DNA-binding domain 110 170 IPR016177 GO:0003677
Vium6919g00006 203 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6919g00006 Vium-Chr6919 45322 46831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6919g00006 107 187 AP2-EREBP Transcription Factor Family AT5G07580 71.605 1.15e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6919g00006 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6919g00006 - - pvu:PHAVU_007G135900g 351.673